Variant report

Variant	rs10142162
Chromosome Location	chr14:70534910-70534911
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10129546	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10130363	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10138883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139405	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10147004	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28362750	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28413804	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28435585	0.87[EUR][1000 genomes]
rs28472318	0.87[EUR][1000 genomes]
rs28640248	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59764487	0.87[EUR][1000 genomes]
rs72729840	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72729845	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72729857	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729859	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729860	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729883	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729887	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729889	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv519644	chr14:70534823-70541026	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70512800-70535600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70526400-70549000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:70530600-70548800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:70534000-70536800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr14:70534600-70535000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:70534800-70536000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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