Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70564827..70567373-chr14:70568673..70570974,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10129546	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138883	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10139405	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142162	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10147004	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28362750	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28413804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28435585	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28472318	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28640248	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59764487	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72729840	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72729845	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72729857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729883	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70560000-70567600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr14:70560000-70567800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:70563400-70565600	Bivalent Enhancer	Fetal Lung	lung
4	chr14:70563400-70567400	Enhancers	HSMMtube	muscle
5	chr14:70563600-70566000	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:70563600-70566000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:70564400-70565600	Enhancers	Brain Germinal Matrix	brain
8	chr14:70564400-70565600	Enhancers	Colon Smooth Muscle	Colon
9	chr14:70564400-70565600	Enhancers	Stomach Smooth Muscle	stomach
10	chr14:70564400-70565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:70564400-70566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:70564600-70565600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:70564600-70565800	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:70564600-70565800	Enhancers	HSMM	muscle
15	chr14:70564800-70565800	Weak transcription	Brain Angular Gyrus	brain
16	chr14:70564800-70566400	Enhancers	Brain Anterior Caudate	brain
17	chr14:70565000-70565800	Enhancers	HepG2	liver
18	chr14:70565000-70566400	Enhancers	Fetal Brain Male	brain
19	chr14:70565200-70565600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:70565400-70565800	Enhancers	Fetal Brain Female	brain
21	chr14:70565400-70566400	Weak transcription	Psoas Muscle	Psoas

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