Variant report

Variant	rs10139877
Chromosome Location	chr14:68798905-68798906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68797384..68800129-chr14:68809250..68811315,3	MCF-7	breast:
2	chr14:68798605..68800534-chr14:68804811..68807442,2	K562	blood:
3	chr14:68793230..68795249-chr14:68798426..68801112,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240210	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10047807	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10134891	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap]
rs13379204	1.00[CEU][hapmap]
rs17105407	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs8013472	1.00[CEU][hapmap]
rs8022468	1.00[CEU][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:68795400-68799200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:68796600-68799800	Enhancers	Fetal Lung	lung
9	chr14:68796800-68800200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr14:68798000-68799400	Enhancers	Fetal Kidney	kidney
11	chr14:68798200-68799200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:68798200-68799200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:68798200-68799200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:68798200-68799400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:68798200-68799400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:68798200-68799400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr14:68798200-68799600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:68798200-68799600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:68798200-68799600	Enhancers	GM12878-XiMat	blood
20	chr14:68798200-68799800	Enhancers	Fetal Intestine Small	intestine
21	chr14:68798200-68800000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr14:68798200-68800200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:68798200-68800200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:68798200-68800600	Enhancers	Colon Smooth Muscle	Colon
25	chr14:68798200-68802400	Enhancers	Primary B cells from cord blood	blood
26	chr14:68798400-68799000	Enhancers	HepG2	liver
27	chr14:68798400-68799400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr14:68798400-68799800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr14:68798400-68800000	Enhancers	Fetal Stomach	stomach
30	chr14:68798600-68799400	Enhancers	Stomach Smooth Muscle	stomach
31	chr14:68798800-68799200	Enhancers	Fetal Intestine Large	intestine
32	chr14:68798800-68799400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:68798800-68799600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:68798800-68799800	Weak transcription	Monocytes-CD14+_RO01746	blood

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