Variant report

Variant	rs17105407
Chromosome Location	chr14:68793063-68793064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68778894..68781152-chr14:68792473..68795280,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047807	1.00[CEU][hapmap]
rs10134891	1.00[CEU][hapmap]
rs10139877	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10146680	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11844086	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11848477	1.00[CHB][hapmap]
rs12323708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12432392	1.00[CHB][hapmap]
rs12432997	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12435186	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12435229	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12435617	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12436418	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12437046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13379204	1.00[CEU][hapmap]
rs34186721	0.90[AMR][1000 genomes]
rs34334823	0.97[ASN][1000 genomes]
rs3784098	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3784100	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3784103	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3784105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4633645	0.90[AMR][1000 genomes]
rs7151587	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs73272283	1.00[ASN][1000 genomes]
rs73272301	0.97[ASN][1000 genomes]
rs74061613	0.97[ASN][1000 genomes]
rs8013472	1.00[CEU][hapmap]
rs8016350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8022468	1.00[CEU][hapmap]
rs911256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9323505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9944146	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68777000-68793400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:68783400-68793600	Weak transcription	Pancreas	Pancrea
4	chr14:68785600-68793600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:68786600-68795200	Weak transcription	Aorta	Aorta
7	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
9	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
10	chr14:68787600-68795200	Weak transcription	Spleen	Spleen
11	chr14:68788200-68793600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:68788400-68796600	Weak transcription	Fetal Lung	lung
14	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:68790200-68795600	Weak transcription	Psoas Muscle	Psoas
16	chr14:68790400-68795400	Enhancers	Primary B cells from peripheral blood	blood
17	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:68791400-68795000	Enhancers	Primary B cells from cord blood	blood
19	chr14:68791800-68793400	Weak transcription	GM12878-XiMat	blood
20	chr14:68792600-68798200	Weak transcription	Fetal Intestine Small	intestine
21	chr14:68792800-68793200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr14:68792800-68793200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr14:68793000-68793800	Enhancers	Colon Smooth Muscle	Colon

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