Variant report

Variant	rs34186721
Chromosome Location	chr14:68768884-68768885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68767111..68768962-chr14:69260307..69262756,4	MCF-7	breast:
2	chr14:68714804..68718493-chr14:68766094..68768941,3	MCF-7	breast:
3	chr14:68764415..68769564-chr14:68770855..68774967,6	MCF-7	breast:
4	chr14:68765970..68770223-chr14:69260401..69262573,5	MCF-7	breast:
5	chr14:68760897..68764007-chr14:68767297..68769142,3	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11844086	0.91[ASN][1000 genomes]
rs11848477	0.91[ASN][1000 genomes]
rs12432392	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12433646	0.91[ASN][1000 genomes]
rs12434580	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12435186	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12435229	0.91[ASN][1000 genomes]
rs12435617	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12436418	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17105291	0.85[ASN][1000 genomes]
rs17105407	0.90[AMR][1000 genomes]
rs2104046	0.94[ASN][1000 genomes]
rs2331665	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34632606	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3784098	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3784100	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3784103	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3784105	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4633645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7151372	0.91[ASN][1000 genomes]
rs7151587	0.91[ASN][1000 genomes]
rs911256	0.91[ASN][1000 genomes]
rs9944146	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68760600-68773600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:68762000-68773400	Weak transcription	Small Intestine	intestine
4	chr14:68762800-68771400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:68763400-68772400	Weak transcription	Pancreas	Pancrea
6	chr14:68765000-68774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68765200-68771000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68767600-68776400	Weak transcription	Left Ventricle	heart
9	chr14:68768000-68771000	Weak transcription	Fetal Heart	heart
10	chr14:68768200-68772600	Weak transcription	Ovary	ovary
11	chr14:68768400-68769200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:68768400-68769400	ZNF genes & repeats	Fetal Thymus	thymus
13	chr14:68768600-68769000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr14:68768600-68769000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:68768600-68769000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:68768600-68769200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:68768800-68769000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr14:68768800-68769000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:68768800-68769000	ZNF genes & repeats	Aorta	Aorta
20	chr14:68768800-68769000	ZNF genes & repeats	Thymus	Thymus
21	chr14:68768800-68769200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:68768800-68769200	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr14:68768800-68769200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr14:68768800-68769200	ZNF genes & repeats	Fetal Lung	lung
25	chr14:68768800-68769200	ZNF genes & repeats	Dnd41	blood
26	chr14:68768800-68770000	ZNF genes & repeats	Fetal Muscle Leg	muscle

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