Variant report

Variant	rs7151587
Chromosome Location	chr14:68744844-68744845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68734276..68737012-chr14:68743679..68745612,2	K562	blood:
2	chr14:68744804..68746864-chr14:68934365..68937037,2	MCF-7	breast:
3	chr14:68742486..68746272-chr14:68747119..68750722,4	MCF-7	breast:
4	chr14:68740011..68745148-chr14:69257189..69263006,8	MCF-7	breast:
5	chr14:68736827..68740855-chr14:68741614..68744928,4	MCF-7	breast:
6	chr14:68740676..68743465-chr14:68744041..68745922,2	K562	blood:
7	chr14:68743647..68745595-chr14:69260079..69262231,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10146680	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11844086	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11848477	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs12323708	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12432392	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs12432997	0.86[JPT][hapmap]
rs12433646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12434580	1.00[ASN][1000 genomes]
rs12435186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12435229	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12435617	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12436418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12437046	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17105281	1.00[ASW][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap]
rs17105291	0.94[ASN][1000 genomes]
rs17105407	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2104046	0.85[ASN][1000 genomes]
rs2331665	0.97[ASN][1000 genomes]
rs34186721	0.91[ASN][1000 genomes]
rs34632606	0.97[ASN][1000 genomes]
rs3784098	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3784100	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3784103	0.85[ASN][1000 genomes]
rs3784105	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs4083474	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs4633645	0.91[ASN][1000 genomes]
rs7147214	1.00[ASW][hapmap];0.87[LWK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs7151372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016350	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs911256	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9323505	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs9944146	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68729200-68749400	Weak transcription	Lung	lung
2	chr14:68730000-68745000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:68731600-68746000	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:68731800-68749000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68736200-68745000	Weak transcription	Liver	Liver
6	chr14:68736400-68745400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:68736600-68745200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:68736600-68745200	Weak transcription	HSMMtube	muscle
9	chr14:68736600-68745400	Weak transcription	Spleen	Spleen
10	chr14:68737000-68745200	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:68737400-68745200	Weak transcription	Psoas Muscle	Psoas
12	chr14:68737400-68745400	Weak transcription	Brain Anterior Caudate	brain
13	chr14:68738000-68745000	Weak transcription	Fetal Kidney	kidney
14	chr14:68739000-68750000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:68739200-68745200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:68739200-68748200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:68740000-68750200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:68740000-68751600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:68740200-68746600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr14:68740400-68745800	Weak transcription	Ovary	ovary
21	chr14:68742400-68745200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:68742400-68745800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:68742600-68745200	Weak transcription	Fetal Lung	lung
24	chr14:68742600-68746800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:68742600-68749000	Weak transcription	Thymus	Thymus
26	chr14:68742600-68749200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:68742600-68751800	Weak transcription	Stomach Mucosa	stomach
28	chr14:68742800-68745000	Weak transcription	K562	blood
29	chr14:68742800-68745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:68742800-68745800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr14:68742800-68747000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:68742800-68747400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:68742800-68749000	Weak transcription	Small Intestine	intestine
34	chr14:68743000-68745400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:68743000-68745800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr14:68743000-68746600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:68743000-68747000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:68743000-68747800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:68743000-68748200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:68743000-68749200	Weak transcription	Fetal Intestine Small	intestine
41	chr14:68743000-68749400	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:68743200-68745000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:68743200-68747000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:68743200-68749200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:68743600-68745800	Weak transcription	Fetal Thymus	thymus
46	chr14:68743600-68746000	Weak transcription	Primary T cells from cord blood	blood
47	chr14:68743600-68746600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr14:68743600-68746600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr14:68743800-68746800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr14:68744000-68748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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