Variant report

Variant	rs73272283
Chromosome Location	chr14:68794975-68794976
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68793230..68795249-chr14:68798426..68801112,3	MCF-7	breast:
2	chr14:68778894..68781152-chr14:68792473..68795280,2	MCF-7	breast:
3	chr14:68785289..68787914-chr14:68794616..68796810,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10146680	0.97[ASN][1000 genomes]
rs12323708	0.97[ASN][1000 genomes]
rs12432997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12437046	0.97[ASN][1000 genomes]
rs17105407	1.00[ASN][1000 genomes]
rs34334823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34518413	0.85[AFR][1000 genomes]
rs35314249	1.00[AFR][1000 genomes]
rs3784103	0.82[ASN][1000 genomes]
rs3784105	1.00[ASN][1000 genomes]
rs4083474	0.97[ASN][1000 genomes]
rs58616347	0.87[AFR][1000 genomes]
rs58773728	0.87[AFR][1000 genomes]
rs60900258	0.95[AFR][1000 genomes]
rs61501912	0.95[AFR][1000 genomes]
rs73272205	0.87[AFR][1000 genomes]
rs73272216	1.00[AFR][1000 genomes]
rs73272218	1.00[AFR][1000 genomes]
rs73272221	1.00[AFR][1000 genomes]
rs73272225	1.00[AFR][1000 genomes]
rs73272271	1.00[AFR][1000 genomes]
rs73272301	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73290285	0.87[AFR][1000 genomes]
rs74061613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8016350	0.97[ASN][1000 genomes]
rs9323505	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68786600-68795200	Weak transcription	Aorta	Aorta
4	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
6	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
7	chr14:68787600-68795200	Weak transcription	Spleen	Spleen
8	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:68788400-68796600	Weak transcription	Fetal Lung	lung
10	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:68790200-68795600	Weak transcription	Psoas Muscle	Psoas
12	chr14:68790400-68795400	Enhancers	Primary B cells from peripheral blood	blood
13	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:68791400-68795000	Enhancers	Primary B cells from cord blood	blood
15	chr14:68792600-68798200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:68793400-68795000	Enhancers	GM12878-XiMat	blood
17	chr14:68793600-68795000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:68793800-68798200	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:68794400-68797400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr14:68794400-68798000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:68794600-68795000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr14:68794800-68795200	Active TSS	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links