Variant report

Variant	rs73272271
Chromosome Location	chr14:68791157-68791158
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12432997	1.00[AFR][1000 genomes]
rs34334823	1.00[AFR][1000 genomes]
rs34518413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58616347	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58773728	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60900258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61501912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272225	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73272283	1.00[AFR][1000 genomes]
rs73290285	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061613	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68777000-68792200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:68777000-68793400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68783400-68793600	Weak transcription	Pancreas	Pancrea
5	chr14:68785600-68793600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:68786600-68795200	Weak transcription	Aorta	Aorta
8	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
10	chr14:68787000-68792400	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
12	chr14:68787600-68795200	Weak transcription	Spleen	Spleen
13	chr14:68787800-68791800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:68788000-68791400	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68788200-68791400	Weak transcription	GM12878-XiMat	blood
16	chr14:68788200-68793600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:68788400-68796600	Weak transcription	Fetal Lung	lung
19	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:68790200-68795600	Weak transcription	Psoas Muscle	Psoas
21	chr14:68790400-68795400	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle

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