Variant report

Variant	rs58773728
Chromosome Location	chr14:68774852-68774853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68770678..68778907-chr14:69255944..69264299,32	MCF-7	breast:
2	chr14:68771546..68782546-chr14:69251132..69265678,35	MCF-7	breast:
3	chr14:68772538..68775066-chr9:30973909..30976210,2	MCF-7	breast:
4	chr14:68772101..68775016-chr14:68999200..69001646,2	MCF-7	breast:
5	chr14:68715259..68719440-chr14:68772805..68775724,5	MCF-7	breast:
6	chr14:68774156..68777438-chr14:68786108..68788577,3	MCF-7	breast:
7	chr14:68772744..68775505-chr14:68776468..68778745,2	MCF-7	breast:
8	chr14:68407343..68410074-chr14:68773850..68776325,3	MCF-7	breast:
9	chr14:68773574..68776467-chr14:68830101..68831913,2	MCF-7	breast:
10	chr14:68774371..68776211-chr14:68881268..68882800,2	MCF-7	breast:
11	chr14:68758495..68760542-chr14:68773448..68775284,2	MCF-7	breast:
12	chr14:68773930..68776459-chr14:69021069..69023168,2	MCF-7	breast:
13	chr14:68324435..68327325-chr14:68773194..68775076,2	MCF-7	breast:
14	chr14:68773440..68776404-chr14:68870771..68875059,3	MCF-7	breast:
15	chr14:68773014..68775765-chr14:69170591..69173444,2	MCF-7	breast:
16	chr14:68774341..68775925-chr14:68938870..68941254,2	MCF-7	breast:
17	chr14:68750460..68752816-chr14:68771764..68775094,3	MCF-7	breast:
18	chr14:68726546..68729527-chr14:68773268..68775241,2	MCF-7	breast:
19	chr14:68764415..68769564-chr14:68770855..68774967,6	MCF-7	breast:
20	chr14:68718999..68725813-chr14:68770906..68776082,15	MCF-7	breast:
21	chr14:68746874..68748839-chr14:68773271..68775923,2	MCF-7	breast:
22	chr14:68709605..68712034-chr14:68773176..68774923,2	MCF-7	breast:
23	chr14:68772159..68774969-chr14:69141691..69143278,2	MCF-7	breast:
24	chr14:68606890..68608709-chr14:68772989..68775873,2	MCF-7	breast:
25	chr14:68773035..68775365-chr14:69282821..69285727,2	MCF-7	breast:
26	chr14:68612130..68613660-chr14:68774074..68776963,2	MCF-7	breast:
27	chr14:68409488..68412789-chr14:68771965..68776404,3	MCF-7	breast:
28	chr14:68773192..68776654-chr14:68782596..68784828,4	MCF-7	breast:
29	chr14:68657619..68661211-chr14:68772709..68775364,5	MCF-7	breast:
30	chr14:68657382..68663307-chr14:68771021..68776308,9	MCF-7	breast:
31	chr14:68756682..68758225-chr14:68773128..68775956,2	MCF-7	breast:
32	chr14:68771578..68778202-chr14:68921843..68928978,14	MCF-7	breast:
33	chr14:68774488..68779341-chr14:69281641..69286880,6	MCF-7	breast:
34	chr14:68710270..68718985-chr14:68771545..68777065,19	MCF-7	breast:
35	chr14:68773029..68777937-chr14:68858584..68866534,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12432997	0.87[AFR][1000 genomes]
rs34334823	0.87[AFR][1000 genomes]
rs34518413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314249	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58616347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60900258	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61501912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272216	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272218	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272221	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272225	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73272271	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272283	0.87[AFR][1000 genomes]
rs73290285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061613	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68767600-68776400	Weak transcription	Left Ventricle	heart
3	chr14:68769000-68776400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:68772000-68777800	Enhancers	Fetal Kidney	kidney
6	chr14:68772000-68788400	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:68772400-68775800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr14:68772400-68776000	Enhancers	Fetal Intestine Large	intestine
9	chr14:68772400-68776000	Enhancers	Fetal Intestine Small	intestine
10	chr14:68772600-68776000	Enhancers	Liver	Liver
11	chr14:68772600-68777000	Enhancers	Fetal Lung	lung
12	chr14:68772600-68788000	Weak transcription	Lung	lung
13	chr14:68773000-68775000	Enhancers	HepG2	liver
14	chr14:68773000-68776200	Enhancers	Stomach Mucosa	stomach
15	chr14:68773000-68777000	Enhancers	Colon Smooth Muscle	Colon
16	chr14:68773000-68777000	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:68773400-68775200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr14:68773400-68776200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:68773400-68776600	Enhancers	Fetal Muscle Leg	muscle
20	chr14:68773400-68776600	Enhancers	Fetal Stomach	stomach
21	chr14:68773600-68775800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr14:68773800-68775000	Enhancers	Adipose Nuclei	Adipose
23	chr14:68773800-68775400	Enhancers	NHDF-Ad	bronchial
24	chr14:68773800-68775800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr14:68773800-68776000	Weak transcription	Fetal Thymus	thymus
26	chr14:68773800-68776000	Enhancers	GM12878-XiMat	blood
27	chr14:68773800-68776800	Weak transcription	Small Intestine	intestine
28	chr14:68773800-68777000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:68773800-68777000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:68774000-68775600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:68774000-68775800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr14:68774000-68776000	Weak transcription	Ovary	ovary
33	chr14:68774000-68776000	Weak transcription	Pancreas	Pancrea
34	chr14:68774000-68776200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:68774000-68776600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:68774000-68776800	Enhancers	Osteobl	bone
37	chr14:68774000-68777000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr14:68774200-68775000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr14:68774200-68775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:68774200-68775400	Weak transcription	Fetal Brain Male	brain
41	chr14:68774200-68775600	Enhancers	Brain Hippocampus Middle	brain
42	chr14:68774200-68776400	Weak transcription	Aorta	Aorta
43	chr14:68774200-68777800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:68774400-68775000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr14:68774400-68775200	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr14:68774400-68775200	Enhancers	HSMMtube	muscle
47	chr14:68774400-68776000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:68774400-68776200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr14:68774400-68785200	Weak transcription	Psoas Muscle	Psoas
50	chr14:68774600-68775000	Enhancers	HUES48 Cell Line	embryonic stem cell

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