Variant report

Variant	rs10140457
Chromosome Location	chr14:64716693-64716694
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10136955	0.84[EUR][1000 genomes]
rs10137994	0.84[EUR][1000 genomes]
rs17101774	0.84[EUR][1000 genomes]
rs28663685	0.84[EUR][1000 genomes]
rs73267889	0.84[EUR][1000 genomes]
rs73269927	0.84[EUR][1000 genomes]
rs73269936	0.84[EUR][1000 genomes]
rs9323448	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:64713000-64723800	Weak transcription	Thymus	Thymus
3	chr14:64715400-64717600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:64715600-64718600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:64716000-64718000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:64716200-64722000	Weak transcription	Fetal Lung	lung
7	chr14:64716400-64717200	Weak transcription	Ovary	ovary
8	chr14:64716400-64733000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:64716600-64718000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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