Variant report

Variant	rs10140832
Chromosome Location	chr14:39714987-39714988
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10137623	0.88[CHB][hapmap]
rs1570131	0.83[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.95[ASN][1000 genomes]
rs17109030	0.83[JPT][hapmap]
rs17621388	0.83[JPT][hapmap]
rs17692639	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34664345	0.82[ASN][1000 genomes]
rs34843498	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs35280646	0.80[ASN][1000 genomes]
rs7140766	0.96[ASN][1000 genomes]
rs7143942	0.88[JPT][hapmap]
rs715136	0.95[ASN][1000 genomes]
rs7153523	0.85[ASW][hapmap];0.91[YRI][hapmap]
rs7154632	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs7155164	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8006182	0.83[JPT][hapmap]
rs8014839	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs8015094	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs8017896	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10140832	TRAPPC6B	cis	multi-tissue	Pritchard
rs10140832	PNN	cis	parietal	SCAN
rs10140832	TRAPPC6B	cis	cerebellum	SCAN
rs10140832	NKX2-8	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39706200-39715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:39708800-39718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:39710000-39717400	Strong transcription	HepG2	liver
6	chr14:39710600-39716000	Strong transcription	Fetal Intestine Small	intestine
7	chr14:39711200-39715600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:39711200-39715800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:39711200-39715800	Weak transcription	Osteobl	bone
10	chr14:39711200-39716000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:39711200-39719400	Strong transcription	Liver	Liver
12	chr14:39711400-39716000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:39713400-39716000	Weak transcription	Fetal Intestine Large	intestine
14	chr14:39713400-39716000	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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