Variant report

Variant	rs10140902
Chromosome Location	chr14:55883415-55883416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ATG14	TF binding region
RPL21P6	TF binding region
ENSG00000239199	Chromatin interaction
ENSG00000178974	Chromatin interaction
ENSG00000126775	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10134937	0.80[AMR][1000 genomes]
rs10135891	0.80[AMR][1000 genomes]
rs10139546	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845802	0.86[AMR][1000 genomes]
rs17128464	0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2050669	0.80[AMR][1000 genomes]
rs2065998	0.80[AMR][1000 genomes]
rs2341536	0.80[AMR][1000 genomes]
rs28620798	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573025	1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs7143921	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016716	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv901959	chr14:55853724-55916225	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a
4	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	nsv564874	chr14:55879685-56027815	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55879200-55885200	Weak transcription	Right Ventricle	heart
2	chr14:55879600-55884000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:55879800-55883800	Weak transcription	K562	blood
4	chr14:55879800-55885200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:55882000-55883800	Weak transcription	Fetal Heart	heart
6	chr14:55883200-55884800	Enhancers	Fetal Intestine Large	intestine
7	chr14:55883200-55886800	Enhancers	Fetal Intestine Small	intestine
8	chr14:55883400-55883600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr14:55883400-55883600	Enhancers	GM12878-XiMat	blood
10	chr14:55883400-55884000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:55883400-55885000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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