Variant report

Variant	rs11845802
Chromosome Location	chr14:55844332-55844333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55741219..55743724-chr14:55842987..55845044,2	K562	blood:
2	chr14:55842441..55844954-chr14:55847953..55850798,4	K562	blood:
3	chr14:55838023..55840863-chr14:55842688..55845162,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10138838	0.83[EUR][1000 genomes]
rs10139546	0.86[AMR][1000 genomes]
rs10140902	0.86[AMR][1000 genomes]
rs10220441	0.83[EUR][1000 genomes]
rs10483640	0.83[EUR][1000 genomes]
rs17128292	0.83[EUR][1000 genomes]
rs17128323	0.83[EUR][1000 genomes]
rs17128434	0.84[AMR][1000 genomes]
rs17128438	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17128464	0.82[AMR][1000 genomes]
rs1886784	0.83[EUR][1000 genomes]
rs28620798	0.86[AMR][1000 genomes]
rs2985914	0.83[EUR][1000 genomes]
rs3759666	0.83[EUR][1000 genomes]
rs55912862	0.83[EUR][1000 genomes]
rs56102648	0.83[EUR][1000 genomes]
rs56192604	0.83[EUR][1000 genomes]
rs60023093	0.83[EUR][1000 genomes]
rs60204830	0.83[EUR][1000 genomes]
rs60715972	0.83[EUR][1000 genomes]
rs7141563	0.83[EUR][1000 genomes]
rs7142831	0.83[EUR][1000 genomes]
rs7143921	0.86[AMR][1000 genomes]
rs7145502	0.83[EUR][1000 genomes]
rs7148959	1.00[EUR][1000 genomes]
rs7155704	0.83[EUR][1000 genomes]
rs7155729	0.83[EUR][1000 genomes]
rs7160642	0.83[EUR][1000 genomes]
rs7160753	0.83[EUR][1000 genomes]
rs74050937	0.83[EUR][1000 genomes]
rs74050939	0.83[EUR][1000 genomes]
rs74050958	0.83[EUR][1000 genomes]
rs74053904	0.84[AMR][1000 genomes]
rs8016444	0.83[EUR][1000 genomes]
rs8016716	0.83[EUR][1000 genomes]
rs8017821	0.83[EUR][1000 genomes]
rs8021377	0.84[AMR][1000 genomes]
rs946058	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv901957	chr14:55819219-55853724	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
3	chr14:55818200-55877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:55818400-55858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:55819400-55847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:55819400-55850600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:55819400-55855200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:55821400-55848800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:55821400-55849200	Weak transcription	Fetal Heart	heart
10	chr14:55821400-55865200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:55823200-55848400	Weak transcription	HMEC	breast
12	chr14:55824000-55848400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:55831000-55859400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:55831800-55858000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr14:55832000-55849600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:55832000-55850800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:55832400-55857800	Strong transcription	Liver	Liver
18	chr14:55833000-55845600	Weak transcription	Colonic Mucosa	Colon
19	chr14:55836800-55845400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:55836800-55877800	Weak transcription	Esophagus	oesophagus
21	chr14:55837200-55845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:55837400-55845200	Weak transcription	Right Ventricle	heart
23	chr14:55838200-55850400	Weak transcription	Stomach Mucosa	stomach
24	chr14:55838600-55849200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr14:55838600-55853600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:55839400-55849000	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:55839400-55859200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:55839600-55858600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr14:55839800-55848400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:55839800-55848400	Weak transcription	K562	blood
31	chr14:55840200-55858800	Strong transcription	Primary B cells from cord blood	blood
32	chr14:55840400-55856600	Strong transcription	Fetal Intestine Large	intestine
33	chr14:55840400-55856800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:55840600-55844600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:55840600-55848600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:55840600-55849400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:55840600-55849600	Strong transcription	Fetal Lung	lung
38	chr14:55840600-55851800	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:55840600-55854200	Strong transcription	Brain Cingulate Gyrus	brain
40	chr14:55841000-55844600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:55841000-55847000	Weak transcription	NH-A	brain
42	chr14:55841000-55849400	Strong transcription	Adipose Nuclei	Adipose
43	chr14:55841000-55859000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:55841200-55846600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr14:55841200-55849000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr14:55841600-55847000	Weak transcription	NHEK	skin
47	chr14:55841800-55855000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr14:55842000-55845000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:55842000-55846400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr14:55842000-55848000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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