Variant report

Variant	rs10483640
Chromosome Location	chr14:55689749-55689750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55686099..55688030-chr14:55688933..55691516,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10130894	0.86[EUR][1000 genomes]
rs10134937	0.86[EUR][1000 genomes]
rs10135891	0.86[EUR][1000 genomes]
rs10139912	0.94[ASN][1000 genomes]
rs10144869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149926	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162552	0.86[EUR][1000 genomes]
rs10498474	0.81[YRI][hapmap];0.85[ASN][1000 genomes]
rs11844441	0.86[EUR][1000 genomes]
rs11845802	0.83[EUR][1000 genomes]
rs11850516	0.85[ASN][1000 genomes]
rs11851023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851945	0.88[ASN][1000 genomes]
rs12323804	1.00[ASN][1000 genomes]
rs13379398	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128230	0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs17128262	0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17128275	0.88[ASN][1000 genomes]
rs17128277	0.88[ASN][1000 genomes]
rs17128292	0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17128303	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128323	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128434	0.86[EUR][1000 genomes]
rs1886784	0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1887494	0.85[ASN][1000 genomes]
rs1952086	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050669	0.86[EUR][1000 genomes]
rs2065998	0.86[EUR][1000 genomes]
rs2075598	0.85[ASN][1000 genomes]
rs2274272	0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs2341536	0.86[EUR][1000 genomes]
rs28379450	0.86[EUR][1000 genomes]
rs28408795	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28436894	0.82[ASN][1000 genomes]
rs28661252	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28681113	0.82[ASN][1000 genomes]
rs28883964	1.00[ASN][1000 genomes]
rs2985914	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3759666	0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4334208	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55772085	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55848305	0.85[ASN][1000 genomes]
rs55912862	0.94[ASN][1000 genomes]
rs56192604	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56358335	0.85[ASN][1000 genomes]
rs57064758	0.85[ASN][1000 genomes]
rs57196783	0.85[ASN][1000 genomes]
rs57612384	1.00[ASN][1000 genomes]
rs57750925	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58737648	0.82[ASN][1000 genomes]
rs59155162	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59700273	0.82[ASN][1000 genomes]
rs60023093	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60204830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60549793	0.82[ASN][1000 genomes]
rs60715972	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61662514	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573004	0.85[ASN][1000 genomes]
rs7141563	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7141706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7142831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147172	1.00[ASN][1000 genomes]
rs7147666	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7148957	0.85[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.82[ASN][1000 genomes]
rs7150083	0.82[ASN][1000 genomes]
rs7152543	0.82[ASN][1000 genomes]
rs7153322	0.82[ASN][1000 genomes]
rs7153418	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7153651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7153958	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7154368	0.88[ASN][1000 genomes]
rs7155704	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155936	0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7156997	0.82[ASN][1000 genomes]
rs7157000	0.82[ASN][1000 genomes]
rs7157585	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7159530	0.85[ASN][1000 genomes]
rs7160411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7160575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161564	0.82[ASN][1000 genomes]
rs72716670	0.82[ASN][1000 genomes]
rs74050920	0.83[EUR][1000 genomes]
rs74050921	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs74050928	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74050932	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74050937	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74050939	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74050958	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050963	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74050975	0.86[EUR][1000 genomes]
rs74053904	0.86[EUR][1000 genomes]
rs8004899	0.82[ASN][1000 genomes]
rs8005218	0.82[ASN][1000 genomes]
rs8007038	0.86[EUR][1000 genomes]
rs8009060	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8009181	0.82[ASN][1000 genomes]
rs8010751	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8010791	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8010993	0.82[ASN][1000 genomes]
rs8011980	0.85[ASN][1000 genomes]
rs8016444	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017821	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8021377	0.86[EUR][1000 genomes]
rs946058	0.86[EUR][1000 genomes]
rs9652341	0.86[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55686800-55690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:55688600-55690600	Weak transcription	NHDF-Ad	bronchial
3	chr14:55689400-55689800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:55689400-55689800	Enhancers	Ovary	ovary
5	chr14:55689600-55693000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links