Variant report

Variant	rs74050939
Chromosome Location	chr14:55666077-55666078
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55665869..55668002-chr14:55685179..55686916,2	MCF-7	breast:
2	chr14:55664630..55666911-chr14:55737863..55740088,2	K562	blood:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10139912	0.94[ASN][1000 genomes]
rs10144869	1.00[ASN][1000 genomes]
rs10483640	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10498474	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11845802	0.83[EUR][1000 genomes]
rs11850516	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11851023	1.00[ASN][1000 genomes]
rs11851945	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12323804	1.00[ASN][1000 genomes]
rs13379420	0.97[ASN][1000 genomes]
rs17128230	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17128262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17128275	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17128277	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17128292	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17128303	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17128323	1.00[ASN][1000 genomes]
rs1886784	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1887494	0.85[ASN][1000 genomes]
rs1952086	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2075598	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2274272	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28408795	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28436894	0.82[ASN][1000 genomes]
rs28681113	0.82[ASN][1000 genomes]
rs28883964	1.00[ASN][1000 genomes]
rs2985914	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3759666	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4334208	0.97[ASN][1000 genomes]
rs55772085	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55848305	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55912862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56192604	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56358335	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57064758	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57196783	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57612384	1.00[ASN][1000 genomes]
rs57750925	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58737648	0.82[ASN][1000 genomes]
rs59155162	1.00[ASN][1000 genomes]
rs59700273	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60023093	0.97[ASN][1000 genomes]
rs60204830	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60549793	0.82[ASN][1000 genomes]
rs60715972	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573004	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7141563	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7141706	0.94[ASN][1000 genomes]
rs7142831	1.00[ASN][1000 genomes]
rs7145502	1.00[ASN][1000 genomes]
rs7147172	1.00[ASN][1000 genomes]
rs7147666	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7148957	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.82[ASN][1000 genomes]
rs7150083	0.82[ASN][1000 genomes]
rs7152543	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153322	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153418	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153958	1.00[ASN][1000 genomes]
rs7154368	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155704	1.00[ASN][1000 genomes]
rs7155729	1.00[ASN][1000 genomes]
rs7155936	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7156997	0.82[ASN][1000 genomes]
rs7157000	0.82[ASN][1000 genomes]
rs7157585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7159530	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7160411	0.94[ASN][1000 genomes]
rs7160575	1.00[ASN][1000 genomes]
rs7160642	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7160753	1.00[ASN][1000 genomes]
rs7161564	0.82[ASN][1000 genomes]
rs72716670	0.82[ASN][1000 genomes]
rs74050920	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74050921	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050928	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050932	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74050937	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	1.00[ASN][1000 genomes]
rs74050963	0.91[ASN][1000 genomes]
rs8004899	0.82[ASN][1000 genomes]
rs8005218	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009009	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009060	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8009181	0.82[ASN][1000 genomes]
rs8010751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8010791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8010993	0.82[ASN][1000 genomes]
rs8011980	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8016444	1.00[ASN][1000 genomes]
rs8016716	1.00[ASN][1000 genomes]
rs8017821	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:55662200-55667200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:55662400-55667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:55662400-55667800	Weak transcription	HepG2	liver
5	chr14:55662600-55671000	Weak transcription	Aorta	Aorta
6	chr14:55665400-55667200	Enhancers	Ovary	ovary

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