Variant report

Variant	rs7153322
Chromosome Location	chr14:55584614-55584615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55574274..55575909-chr14:55583164..55584715,2	K562	blood:
2	chr14:55582371..55584730-chr14:55586498..55588100,2	K562	blood:
3	chr14:55583659..55586455-chr14:55591189..55593234,2	K562	blood:
4	chr14:55572892..55577828-chr14:55580219..55584664,6	K562	blood:
5	chr14:55570137..55572731-chr14:55581864..55585022,3	MCF-7	breast:
6	chr14:55583230..55586186-chr14:55586316..55587998,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10130894	1.00[CHB][hapmap]
rs10138838	0.86[EUR][1000 genomes]
rs10144869	0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs10146943	1.00[CHB][hapmap]
rs10220644	1.00[JPT][hapmap]
rs10483640	0.82[ASN][1000 genomes]
rs10498474	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11850516	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11851023	0.82[ASN][1000 genomes]
rs11851945	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12323804	0.82[ASN][1000 genomes]
rs17093148	1.00[JPT][hapmap]
rs17128159	0.81[GIH][hapmap];1.00[JPT][hapmap]
rs17128230	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128262	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128275	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17128277	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17128292	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17128303	0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[ASN][1000 genomes]
rs17128323	0.82[ASN][1000 genomes]
rs17128370	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1886784	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1887494	0.90[ASN][1000 genomes]
rs2075598	0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274272	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28408795	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28436894	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681113	1.00[ASN][1000 genomes]
rs28883964	0.82[ASN][1000 genomes]
rs2985914	0.86[EUR][1000 genomes]
rs3759666	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55673612	0.97[ASN][1000 genomes]
rs55772085	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55848305	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55912862	0.86[EUR][1000 genomes]
rs56192604	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56358335	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57064758	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57196783	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57612384	0.82[ASN][1000 genomes]
rs57750925	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58737648	0.87[ASN][1000 genomes]
rs59155162	0.82[ASN][1000 genomes]
rs59700273	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60204830	0.82[ASN][1000 genomes]
rs60715972	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573004	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7141563	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7142831	0.82[ASN][1000 genomes]
rs7145502	0.82[ASN][1000 genomes]
rs7147172	0.82[ASN][1000 genomes]
rs7147666	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7148663	1.00[CHB][hapmap]
rs7148957	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149385	1.00[ASN][1000 genomes]
rs7150083	1.00[ASN][1000 genomes]
rs7152543	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153418	0.82[ASN][1000 genomes]
rs7153958	0.82[ASN][1000 genomes]
rs7154368	0.93[ASN][1000 genomes]
rs7155704	0.82[ASN][1000 genomes]
rs7155729	0.82[ASN][1000 genomes]
rs7155936	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7156997	1.00[ASN][1000 genomes]
rs7157000	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157585	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7158989	0.91[ASN][1000 genomes]
rs7159530	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160575	0.82[ASN][1000 genomes]
rs7160642	0.82[ASN][1000 genomes]
rs7160753	0.82[ASN][1000 genomes]
rs7161564	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72716670	1.00[ASN][1000 genomes]
rs74050921	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050928	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050932	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050937	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74050939	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74050958	0.82[ASN][1000 genomes]
rs8004899	1.00[ASN][1000 genomes]
rs8005218	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009009	0.86[EUR][1000 genomes]
rs8009060	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8009181	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs8010751	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8010791	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8010993	0.87[ASN][1000 genomes]
rs8011980	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8012397	1.00[CHB][hapmap];0.87[CHD][hapmap];0.80[ASN][1000 genomes]
rs8016444	0.82[ASN][1000 genomes]
rs8016716	1.00[GIH][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs8017821	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8021832	0.93[ASN][1000 genomes]
rs8022101	0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7153322	ENPP5	trans	brain	seeQTL
rs7153322	NRN1	trans	lymphoblastoid	seeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55575000-55589600	Weak transcription	Small Intestine	intestine
3	chr14:55575800-55584800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
5	chr14:55578400-55584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:55578400-55588000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:55580200-55589000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:55580600-55585200	Enhancers	Duodenum Mucosa	Duodenum
9	chr14:55581400-55585600	Enhancers	Stomach Mucosa	stomach
10	chr14:55582000-55585600	Enhancers	Left Ventricle	heart
11	chr14:55582200-55585600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr14:55582200-55585800	Enhancers	K562	blood
13	chr14:55582200-55588200	Enhancers	Right Atrium	heart
14	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:55582400-55589000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:55583200-55584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:55583600-55584800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:55583600-55584800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:55583600-55587200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr14:55583600-55588800	Weak transcription	Fetal Kidney	kidney
21	chr14:55583800-55584800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:55583800-55585000	Weak transcription	Primary B cells from cord blood	blood
23	chr14:55583800-55586600	Weak transcription	Spleen	Spleen
24	chr14:55583800-55587400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:55583800-55589200	Weak transcription	Lung	lung
26	chr14:55583800-55589200	Weak transcription	Pancreas	Pancrea
27	chr14:55583800-55591600	Weak transcription	Gastric	stomach
28	chr14:55584000-55585600	Enhancers	HepG2	liver
29	chr14:55584000-55587600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr14:55584400-55585000	Enhancers	Esophagus	oesophagus
31	chr14:55584400-55585000	Enhancers	Right Ventricle	heart
32	chr14:55584400-55585400	Enhancers	HMEC	breast
33	chr14:55584400-55585400	Enhancers	HSMM	muscle
34	chr14:55584400-55585600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr14:55584400-55585600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:55584400-55585600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:55584400-55585600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:55584400-55585600	Enhancers	Fetal Muscle Leg	muscle
39	chr14:55584400-55585600	Enhancers	Fetal Thymus	thymus
40	chr14:55584400-55585600	Enhancers	Hela-S3	cervix
41	chr14:55584400-55585600	Enhancers	NHEK	skin
42	chr14:55584400-55585600	Enhancers	Osteobl	bone
43	chr14:55584400-55585800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:55584400-55586600	Enhancers	Adipose Nuclei	Adipose
45	chr14:55584400-55587000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:55584400-55589800	Enhancers	Colonic Mucosa	Colon
47	chr14:55584600-55584800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:55584600-55584800	Enhancers	Primary T cells fromperipheralblood	blood
49	chr14:55584600-55585000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:55584600-55585000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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