Variant report

Variant	rs10220644
Chromosome Location	chr14:55544824-55544825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55544550..55546055-chr14:55553686..55556221,2	K562	blood:
2	chr12:93323184..93323779-chr14:55544160..55544923,2	Hela-S3	cervix:
3	chr14:55518983..55521078-chr14:55544190..55545895,2	K562	blood:
4	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
5	chr14:55517772..55519783-chr14:55542874..55545035,3	MCF-7	breast:
6	chr14:55544249..55545055-chr6:26054911..26055825,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10144886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11846854	1.00[EUR][1000 genomes]
rs17093148	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128129	1.00[EUR][1000 genomes]
rs17128159	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436296	1.00[AMR][1000 genomes]
rs28481602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879885	1.00[AMR][1000 genomes]
rs59220564	1.00[EUR][1000 genomes]
rs7161564	1.00[JPT][hapmap]
rs8009181	1.00[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55543400-55545000	Enhancers	HMEC	breast
4	chr14:55543600-55545800	Enhancers	Placenta	Placenta
5	chr14:55543600-55546400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:55543800-55545000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:55543800-55545000	Flanking Active TSS	Hela-S3	cervix
8	chr14:55543800-55545000	Flanking Active TSS	NHEK	skin
9	chr14:55543800-55545200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:55543800-55545400	Enhancers	Fetal Intestine Large	intestine
11	chr14:55544000-55545000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:55544600-55545600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:55544600-55545800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:55544600-55545800	Weak transcription	GM12878-XiMat	blood
17	chr14:55544800-55545000	Weak transcription	Right Atrium	heart
18	chr14:55544800-55545000	Enhancers	HepG2	liver
19	chr14:55544800-55545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:55544800-55545800	Weak transcription	HSMMtube	muscle
21	chr14:55544800-55546000	Weak transcription	HSMM	muscle
22	chr14:55544800-55546200	Enhancers	Fetal Intestine Small	intestine
23	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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