Variant report

Variant	rs17128159
Chromosome Location	chr14:55561647-55561648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55559803..55562181-chr14:55568621..55570852,2	K562	blood:
2	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
3	chr14:55561171..55564050-chr14:55565929..55567556,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

rs_ID	r²[population]
rs10144869	0.81[GIH][hapmap]
rs10144886	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10220644	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846854	1.00[EUR][1000 genomes]
rs17093148	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128129	1.00[EUR][1000 genomes]
rs17128262	0.81[GIH][hapmap]
rs17128303	0.81[GIH][hapmap]
rs17128370	0.81[GIH][hapmap]
rs1886784	0.81[GIH][hapmap]
rs2075598	0.81[GIH][hapmap]
rs28481602	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759666	0.81[GIH][hapmap]
rs59220564	1.00[EUR][1000 genomes]
rs7161564	1.00[JPT][hapmap]
rs8009181	1.00[JPT][hapmap]
rs8016716	0.81[GIH][hapmap]

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
2	chr14:55556400-55561800	Weak transcription	NHLF	lung
3	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
5	chr14:55559000-55563800	Weak transcription	GM12878-XiMat	blood
6	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
7	chr14:55559600-55564000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:55559600-55564200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:55559800-55563800	Weak transcription	Adipose Nuclei	Adipose
10	chr14:55559800-55564000	Weak transcription	Fetal Intestine Large	intestine
11	chr14:55560000-55564000	Weak transcription	Colonic Mucosa	Colon
12	chr14:55560000-55564000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:55560000-55564000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:55560000-55564200	Weak transcription	Fetal Intestine Small	intestine
15	chr14:55560200-55564000	Weak transcription	Stomach Mucosa	stomach
16	chr14:55560400-55564200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:55560600-55562000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:55560600-55562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:55560800-55562400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:55560800-55563600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:55561000-55561800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:55561000-55561800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr14:55561000-55561800	Enhancers	A549	lung
25	chr14:55561000-55562400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:55561000-55562600	Enhancers	Placenta	Placenta
27	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr14:55561400-55561800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr14:55561400-55561800	Flanking Active TSS	Hela-S3	cervix
30	chr14:55561400-55561800	Enhancers	HMEC	breast
31	chr14:55561400-55561800	Weak transcription	NHDF-Ad	bronchial
32	chr14:55561400-55562000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:55561400-55562000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:55561400-55562000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:55561400-55562000	Enhancers	Osteobl	bone
36	chr14:55561400-55562200	Enhancers	NHEK	skin
37	chr14:55561600-55561800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:55561600-55562000	Enhancers	HUVEC	blood vessel
39	chr14:55561600-55562000	Enhancers	NH-A	brain
40	chr14:55561600-55562400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:55561600-55563800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:55561600-55564600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:55561600-55565000	Weak transcription	Fetal Muscle Leg	muscle

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