Variant report

Variant	rs2075598
Chromosome Location	chr14:55604353-55604354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:49)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:49 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:55604220-55604370	HFF-Myc	foreskin:	n/a	n/a
2	STAT3	chr14:55604342-55604396	MCF10A-Er-Src	breast:	n/a	n/a
3	E2F4	chr14:55604350-55604435	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr14:55604280-55604430	HPAF	blood vessel:	n/a	n/a
5	CTCF	chr14:55604260-55604410	AG10803	skin:	n/a	n/a
6	CTCF	chr14:55604348-55604377	Gliobla	brain:	n/a	n/a
7	POLR2A	chr14:55603834-55604477	U87	brain:	n/a	n/a
8	CTCF	chr14:55604280-55604430	HCFaa	heart:	n/a	n/a
9	RAD21	chr14:55604157-55604508	IMR90	lung:	n/a	n/a
10	CTCF	chr14:55604240-55604390	AG09309	skin:	n/a	n/a
11	CTCF	chr14:55604280-55604430	AG04450	lung:	n/a	n/a
12	CTCF	chr14:55604300-55604450	HRPEpiC	eye:	n/a	n/a
13	POLR2A	chr14:55604023-55604524	PFSK-1	brain:	n/a	n/a
14	CTCF	chr14:55604320-55604470	HA-sp	spinal cord:	n/a	n/a
15	CTCF	chr14:55604222-55604507	IMR90	lung:	n/a	n/a
16	POLR2A	chr14:55604208-55604494	Hela-S3	cervix:	n/a	n/a
17	CTCF	chr14:55604280-55604430	AG04449	skin:	n/a	n/a
18	CTCF	chr14:55604280-55604430	BJ	skin:	n/a	n/a
19	CTCF	chr14:55604280-55604430	HCM	heart:	n/a	n/a
20	CTCF	chr14:55604280-55604430	HA-sp	spinal cord:	n/a	n/a
21	CTCF	chr14:55604280-55604430	AG09319	gingival:	n/a	n/a
22	CTCF	chr14:55604300-55604450	HMF	breast:	n/a	n/a
23	POLR2A	chr14:55603800-55604477	U87	brain:	n/a	n/a
24	CTCF	chr14:55604260-55604410	AG09319	gingival:	n/a	n/a
25	POLR2A	chr14:55604210-55604476	HUVEC	blood vessel:	n/a	n/a
26	CTCF	chr14:55604280-55604430	HMEC	breast:	n/a	n/a
27	STAT3	chr14:55604328-55604432	MCF10A-Er-Src	breast:	n/a	n/a
28	CTCF	chr14:55604280-55604430	AoAF	blood vessel:	n/a	n/a
29	CTCF	chr14:55604300-55604450	HBMEC	blood vessel:	n/a	n/a
30	STAT3	chr14:55604307-55604432	MCF10A-Er-Src	breast:	n/a	n/a
31	CTCF	chr14:55604280-55604430	HPF	lung:	n/a	n/a
32	CTCF	chr14:55604320-55604470	HPF	lung:	n/a	n/a
33	POLR2A	chr14:55603873-55604733	U87	brain:	n/a	n/a
34	CTCF	chr14:55604340-55604490	HCPEpiC	choroid plexus:	n/a	n/a
35	CTCF	chr14:55604280-55604430	HCPEpiC	choroid plexus:	n/a	n/a
36	CTCF	chr14:55604340-55604490	HVMF	connective:	n/a	n/a
37	CTCF	chr14:55604320-55604470	HMF	breast:	n/a	n/a
38	CTCF	chr14:55604280-55604430	HRPEpiC	eye:	n/a	n/a
39	CTCF	chr14:55604300-55604450	AoAF	blood vessel:	n/a	n/a
40	CTCF	chr14:55604260-55604530	HMEC	breast:	n/a	n/a
41	CTCF	chr14:55604300-55604450	AG09309	skin:	n/a	n/a
42	CTCF	chr14:55604340-55604411	ProgFib	skin:	n/a	n/a
43	CTCF	chr14:55604260-55604410	HAc	cerebellar:	n/a	n/a
44	RAD21	chr14:55604140-55604439	SK-N-SH_RA	brain:	n/a	n/a
45	CTCF	chr14:55604280-55604430	HBMEC	blood vessel:	n/a	n/a
46	CTCF	chr14:55604300-55604450	NHDF-neo	bronchial:	n/a	n/a
47	CTCF	chr14:55604240-55604390	HAc	cerebellar:	n/a	n/a
48	CTCF	chr14:55604260-55604410	AG04450	lung:	n/a	n/a
49	POLR2A	chr14:55604044-55604499	Hela-S3	cervix:	n/a	n/a

No data

Variant related genes	Relation type
LGALS3	TF binding region

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10138838	0.86[EUR][1000 genomes]
rs10144869	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs10483640	0.85[ASN][1000 genomes]
rs10498474	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128159	0.81[GIH][hapmap]
rs17128230	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.88[CHD][hapmap];1.00[GIH][hapmap];0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs17128370	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1886784	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs2274272	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848305	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.86[EUR][1000 genomes]
rs56192604	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.82[ASN][1000 genomes]
rs60204830	0.85[ASN][1000 genomes]
rs60715972	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141563	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	0.85[ASN][1000 genomes]
rs7145502	0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.85[ASN][1000 genomes]
rs7155936	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157585	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7159530	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160411	0.82[CHD][hapmap]
rs7160575	0.85[ASN][1000 genomes]
rs7160642	0.85[ASN][1000 genomes]
rs7160753	0.85[ASN][1000 genomes]
rs7161564	0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.87[AMR][1000 genomes]
rs74050921	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050928	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009009	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	0.94[CHD][hapmap];0.97[ASN][1000 genomes]
rs8010751	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.90[ASN][1000 genomes]
rs8011980	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	1.00[GIH][hapmap];0.85[ASN][1000 genomes]
rs8017821	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:55596600-55606400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55597200-55604600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:55597200-55604800	Weak transcription	GM12878-XiMat	blood
6	chr14:55597200-55605200	Weak transcription	A549	lung
7	chr14:55597200-55606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:55597200-55607400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:55598400-55607600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:55598600-55607800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:55598800-55605200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:55598800-55605800	Weak transcription	HepG2	liver
15	chr14:55598800-55606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:55598800-55606600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:55598800-55610800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:55599200-55605000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:55599200-55607600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:55599600-55604800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:55599600-55606400	Weak transcription	Dnd41	blood
24	chr14:55600200-55604800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr14:55600200-55605200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
27	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:55600800-55609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:55601000-55604600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:55601200-55605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:55601600-55607000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:55601600-55610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:55602000-55605000	Enhancers	Fetal Heart	heart
34	chr14:55602400-55604600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:55602400-55604800	Enhancers	Left Ventricle	heart
36	chr14:55602400-55605200	Enhancers	Small Intestine	intestine
37	chr14:55602600-55604600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:55602600-55604600	Enhancers	HSMMtube	muscle
39	chr14:55602600-55604600	Genic enhancers	NHEK	skin
40	chr14:55602600-55606000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
41	chr14:55602600-55606800	Genic enhancers	Stomach Mucosa	stomach
42	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:55602800-55605000	Genic enhancers	Colonic Mucosa	Colon
44	chr14:55603000-55604400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:55603000-55604800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr14:55603000-55605000	Weak transcription	Thymus	Thymus
47	chr14:55603200-55604800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:55603200-55607600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
50	chr14:55603400-55604400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links