Variant report

Variant	rs55848305
Chromosome Location	chr14:55592093-55592094
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr14:55591562-55592644	PBDE	blood:	n/a	chr14:55592347-55592357
2	TAL1	chr14:55591717-55592118	K562	blood:	n/a	n/a
3	SPI1	chr14:55592073-55592593	HL-60	blood:	n/a	n/a
4	TEAD4	chr14:55591710-55592139	K562	blood:	n/a	n/a
5	CEBPD	chr14:55591735-55592114	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55583659..55586455-chr14:55591189..55593234,2	K562	blood:

Variant related genes	Relation type
LGALS3	TF binding region

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10144869	0.85[ASN][1000 genomes]
rs10483640	0.85[ASN][1000 genomes]
rs10498474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850516	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128230	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs1886784	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs2075598	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56192604	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60204830	0.85[ASN][1000 genomes]
rs60715972	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573004	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141563	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7145502	0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148957	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.85[ASN][1000 genomes]
rs7155936	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.97[ASN][1000 genomes]
rs7157585	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7159530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160575	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7160642	0.85[ASN][1000 genomes]
rs7160753	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7161564	0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74050921	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050928	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009009	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	0.97[ASN][1000 genomes]
rs8010751	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8011980	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	0.85[ASN][1000 genomes]
rs8017821	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
3	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:55584600-55592600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:55586000-55593600	Enhancers	Left Ventricle	heart
6	chr14:55586800-55592600	Enhancers	Placenta	Placenta
7	chr14:55587000-55595600	Enhancers	Stomach Mucosa	stomach
8	chr14:55587400-55592600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:55587600-55595600	Enhancers	Fetal Heart	heart
10	chr14:55588800-55594400	Enhancers	Adipose Nuclei	Adipose
11	chr14:55589200-55592800	Enhancers	Lung	lung
12	chr14:55589200-55592800	Enhancers	Right Ventricle	heart
13	chr14:55589200-55593000	Enhancers	Right Atrium	heart
14	chr14:55589200-55593400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:55589600-55593000	Enhancers	Esophagus	oesophagus
16	chr14:55589600-55593200	Enhancers	Small Intestine	intestine
17	chr14:55589600-55594600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:55589800-55593200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr14:55589800-55594000	Weak transcription	HSMM	muscle
20	chr14:55589800-55595600	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:55590000-55593800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:55590000-55595400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:55590000-55595600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr14:55590000-55595600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:55590200-55592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:55590200-55593200	Enhancers	Colonic Mucosa	Colon
27	chr14:55590200-55593800	Enhancers	Duodenum Mucosa	Duodenum
28	chr14:55590200-55594000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:55590200-55595800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:55590400-55592200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:55590400-55592200	Weak transcription	NHLF	lung
32	chr14:55590400-55593800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:55590400-55593800	Weak transcription	NHDF-Ad	bronchial
34	chr14:55590400-55595000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:55590400-55595600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:55590600-55592400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:55590600-55593600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:55590600-55593600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:55590800-55592200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:55590800-55592200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:55590800-55592200	Weak transcription	NHEK	skin
42	chr14:55590800-55592400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:55590800-55592600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:55590800-55593400	Enhancers	Hela-S3	cervix
45	chr14:55590800-55593600	Weak transcription	Osteobl	bone
46	chr14:55590800-55594200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:55590800-55596200	Weak transcription	Fetal Lung	lung
48	chr14:55591000-55594000	Weak transcription	NH-A	brain
49	chr14:55591000-55594200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:55591200-55592200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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