Variant report

Variant	rs6573004
Chromosome Location	chr14:55590847-55590848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr14:55590512-55591119	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55587248..55591020-chr14:55595215..55599629,4	K562	blood:

Variant related genes	Relation type
LGALS3	TF binding region
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10138838	0.86[EUR][1000 genomes]
rs10144869	0.85[ASN][1000 genomes]
rs10483640	0.85[ASN][1000 genomes]
rs10498474	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128230	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs1886784	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs2075598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274272	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848305	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.86[EUR][1000 genomes]
rs56192604	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.82[ASN][1000 genomes]
rs60204830	0.85[ASN][1000 genomes]
rs60715972	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7141563	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	0.85[ASN][1000 genomes]
rs7145502	0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.85[ASN][1000 genomes]
rs7155936	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157585	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7159530	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160575	0.85[ASN][1000 genomes]
rs7160642	0.85[ASN][1000 genomes]
rs7160753	0.85[ASN][1000 genomes]
rs7161564	0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.87[AMR][1000 genomes]
rs74050921	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050928	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009009	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	0.97[ASN][1000 genomes]
rs8010751	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.90[ASN][1000 genomes]
rs8011980	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	0.85[ASN][1000 genomes]
rs8017821	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
3	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:55583800-55591600	Weak transcription	Gastric	stomach
5	chr14:55584600-55592600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:55585000-55591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:55585600-55591600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:55586000-55593600	Enhancers	Left Ventricle	heart
9	chr14:55586800-55592600	Enhancers	Placenta	Placenta
10	chr14:55587000-55591600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:55587000-55595600	Enhancers	Stomach Mucosa	stomach
12	chr14:55587400-55592600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:55587600-55595600	Enhancers	Fetal Heart	heart
14	chr14:55588200-55591400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:55588200-55591600	Weak transcription	Primary B cells from cord blood	blood
16	chr14:55588200-55591600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr14:55588400-55591600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:55588800-55592000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:55588800-55594400	Enhancers	Adipose Nuclei	Adipose
20	chr14:55589000-55591000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:55589000-55591000	Enhancers	NH-A	brain
22	chr14:55589000-55591200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:55589000-55591200	Enhancers	Fetal Stomach	stomach
24	chr14:55589200-55591000	Enhancers	Spleen	Spleen
25	chr14:55589200-55592800	Enhancers	Lung	lung
26	chr14:55589200-55592800	Enhancers	Right Ventricle	heart
27	chr14:55589200-55593000	Enhancers	Right Atrium	heart
28	chr14:55589200-55593400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:55589400-55591600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr14:55589600-55593000	Enhancers	Esophagus	oesophagus
31	chr14:55589600-55593200	Enhancers	Small Intestine	intestine
32	chr14:55589600-55594600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:55589800-55593200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr14:55589800-55594000	Weak transcription	HSMM	muscle
35	chr14:55589800-55595600	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:55590000-55591800	Weak transcription	K562	blood
37	chr14:55590000-55592000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:55590000-55592000	Weak transcription	GM12878-XiMat	blood
39	chr14:55590000-55593800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:55590000-55595400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:55590000-55595600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:55590000-55595600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr14:55590200-55591600	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr14:55590200-55592000	Weak transcription	HMEC	breast
45	chr14:55590200-55592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:55590200-55593200	Enhancers	Colonic Mucosa	Colon
47	chr14:55590200-55593800	Enhancers	Duodenum Mucosa	Duodenum
48	chr14:55590200-55594000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr14:55590200-55595800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:55590400-55591600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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