Variant report

Variant	rs2274272
Chromosome Location	chr14:55614794-55614795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55517072..55520221-chr14:55614319..55617712,3	MCF-7	breast:
2	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
3	chr14:55517138..55519453-chr14:55614459..55616301,2	MCF-7	breast:
4	chr14:55607540..55609514-chr14:55612298..55615011,2	MCF-7	breast:
5	chr14:55568925..55571630-chr14:55613554..55616278,2	MCF-7	breast:
6	chr14:55524555..55526543-chr14:55613786..55615923,2	MCF-7	breast:
7	chr14:55596607..55598705-chr14:55613153..55615282,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10130894	1.00[CHB][hapmap]
rs10144869	0.85[ASN][1000 genomes]
rs10146943	1.00[CHB][hapmap]
rs10483640	0.85[ASN][1000 genomes]
rs10498474	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850516	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128230	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs17128370	1.00[CHB][hapmap]
rs1886784	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs2075598	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848305	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56192604	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60204830	0.85[ASN][1000 genomes]
rs60715972	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573004	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141563	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7145502	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148663	1.00[CHB][hapmap]
rs7148957	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153651	0.83[YRI][hapmap]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.85[ASN][1000 genomes]
rs7155936	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.97[ASN][1000 genomes]
rs7157585	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7159530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160575	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7160642	0.85[ASN][1000 genomes]
rs7160753	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7161564	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74050921	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050928	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007038	1.00[CHB][hapmap]
rs8009009	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs8010751	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8011980	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs8017821	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
3	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
4	chr14:55604400-55615600	Strong transcription	HSMM	muscle
5	chr14:55604400-55615800	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr14:55604400-55620800	Weak transcription	K562	blood
7	chr14:55604600-55615200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:55604600-55615400	Strong transcription	NHEK	skin
9	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:55604800-55614800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:55604800-55616200	Strong transcription	HMEC	breast
12	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
13	chr14:55605000-55614800	Strong transcription	NH-A	brain
14	chr14:55605000-55616600	Strong transcription	Osteobl	bone
15	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
18	chr14:55605800-55615200	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:55606000-55614800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:55606000-55614800	Strong transcription	Duodenum Mucosa	Duodenum
21	chr14:55606400-55626600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr14:55606600-55615400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:55608000-55614800	Weak transcription	Pancreas	Pancrea
29	chr14:55608000-55616800	Weak transcription	Stomach Mucosa	stomach
30	chr14:55608200-55615400	Weak transcription	Right Ventricle	heart
31	chr14:55608200-55615400	Weak transcription	Spleen	Spleen
32	chr14:55608800-55615000	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:55608800-55615200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:55608800-55615800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:55609000-55614800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:55609000-55615400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:55610000-55617800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:55610600-55621600	Strong transcription	GM12878-XiMat	blood
39	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:55610600-55655600	Strong transcription	Dnd41	blood
42	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:55611000-55616400	Strong transcription	HUVEC	blood vessel
44	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
45	chr14:55611200-55615600	Weak transcription	Esophagus	oesophagus
46	chr14:55611200-55622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr14:55611400-55621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr14:55611600-55615200	Strong transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links