Variant report

Variant	rs10146943
Chromosome Location	chr14:55762025-55762026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10130894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134937	0.87[EUR][1000 genomes]
rs10135891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10144869	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10149926	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162552	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10498474	1.00[CHB][hapmap]
rs11844441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11851023	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13379398	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379420	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17128262	1.00[CHB][hapmap]
rs17128292	1.00[CHB][hapmap]
rs17128323	0.85[AMR][1000 genomes]
rs17128370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17128434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1886784	1.00[CHB][hapmap]
rs2050669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2065998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2274272	1.00[CHB][hapmap]
rs2341536	0.87[EUR][1000 genomes]
rs28379450	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661252	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787988	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2880104	0.88[ASN][1000 genomes]
rs28883964	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3759666	1.00[CHB][hapmap]
rs4334208	0.93[AMR][1000 genomes]
rs56042503	1.00[EUR][1000 genomes]
rs57612384	0.93[AMR][1000 genomes]
rs59155162	0.85[AMR][1000 genomes]
rs60549793	0.82[AMR][1000 genomes]
rs61662514	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147172	0.96[AMR][1000 genomes]
rs7148663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153958	0.85[AMR][1000 genomes]
rs7155704	0.82[AMR][1000 genomes]
rs7155936	1.00[CHB][hapmap]
rs7161564	1.00[CHB][hapmap]
rs74050958	0.85[AMR][1000 genomes]
rs74050963	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74050968	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050975	0.87[EUR][1000 genomes]
rs74053904	0.87[EUR][1000 genomes]
rs8007038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs8009181	1.00[CHB][hapmap]
rs8010853	0.95[ASN][1000 genomes]
rs8012397	1.00[CHB][hapmap]
rs8016444	0.85[AMR][1000 genomes]
rs8016716	0.85[AMR][1000 genomes]
rs8021377	0.87[EUR][1000 genomes]
rs946058	0.87[EUR][1000 genomes]
rs9652341	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55739200-55768400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:55740000-55770600	Weak transcription	Colonic Mucosa	Colon
3	chr14:55741000-55764600	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55741800-55763800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:55741800-55763800	Weak transcription	NHEK	skin
7	chr14:55741800-55764600	Weak transcription	HMEC	breast
8	chr14:55742000-55765400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:55744000-55767800	Weak transcription	K562	blood
10	chr14:55744800-55764800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:55744800-55765400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:55744800-55767800	Weak transcription	Pancreas	Pancrea
13	chr14:55745000-55764000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:55745000-55768400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:55745000-55774000	Weak transcription	Liver	Liver
16	chr14:55745200-55764000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr14:55745200-55778400	Weak transcription	Fetal Thymus	thymus
18	chr14:55745400-55764000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:55745600-55764200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:55745600-55764200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:55745600-55764400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr14:55745600-55769200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr14:55745800-55765400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:55745800-55765400	Weak transcription	Fetal Stomach	stomach
25	chr14:55746800-55764000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:55747400-55768400	Weak transcription	NHLF	lung
27	chr14:55748000-55770000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:55749400-55769800	Weak transcription	Primary B cells from cord blood	blood
29	chr14:55751600-55765200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:55752000-55765200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:55752000-55765400	Weak transcription	Fetal Intestine Small	intestine
32	chr14:55752200-55764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:55752200-55765200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:55752200-55765200	Weak transcription	Lung	lung
35	chr14:55752400-55763200	Weak transcription	Left Ventricle	heart
36	chr14:55752400-55764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:55752600-55768200	Weak transcription	HSMM	muscle
38	chr14:55752800-55764600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:55754400-55768400	Weak transcription	NHDF-Ad	bronchial
40	chr14:55754600-55764600	Weak transcription	Adipose Nuclei	Adipose
41	chr14:55754800-55765200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:55754800-55778800	Weak transcription	Hela-S3	cervix
43	chr14:55755000-55770600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:55755000-55774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr14:55755200-55768000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:55755800-55768400	Weak transcription	Fetal Brain Female	brain
47	chr14:55756400-55779000	Weak transcription	Gastric	stomach
48	chr14:55756600-55762400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:55756800-55764000	Weak transcription	Stomach Mucosa	stomach
50	chr14:55757000-55765400	Weak transcription	Right Ventricle	heart

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