Variant report

Variant	rs74050968
Chromosome Location	chr14:55766363-55766364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55737940..55739664-chr14:55764646..55766801,2	MCF-7	breast:
2	chr14:55766047..55767790-chr14:55821223..55823323,2	MCF-7	breast:
3	chr14:55736795..55740558-chr14:55765144..55770564,6	K562	blood:
4	chr14:55736930..55738808-chr14:55763982..55767802,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10130894	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134937	0.87[EUR][1000 genomes]
rs10135891	0.87[EUR][1000 genomes]
rs10144869	0.87[EUR][1000 genomes]
rs10146943	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149926	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162552	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11844441	0.87[EUR][1000 genomes]
rs11851023	0.87[EUR][1000 genomes]
rs13379398	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379420	0.87[EUR][1000 genomes]
rs17128370	1.00[ASN][1000 genomes]
rs17128434	0.87[EUR][1000 genomes]
rs2050669	0.87[EUR][1000 genomes]
rs2065998	0.87[EUR][1000 genomes]
rs2341536	0.87[EUR][1000 genomes]
rs28379450	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661252	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787988	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2880104	0.88[ASN][1000 genomes]
rs28883964	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56042503	1.00[EUR][1000 genomes]
rs61662514	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147172	0.83[AMR][1000 genomes]
rs7148663	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050963	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74050975	0.87[EUR][1000 genomes]
rs74053904	0.87[EUR][1000 genomes]
rs8007038	0.87[EUR][1000 genomes]
rs8010853	0.95[ASN][1000 genomes]
rs8021377	0.87[EUR][1000 genomes]
rs946058	0.87[EUR][1000 genomes]
rs9652341	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55739200-55768400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:55740000-55770600	Weak transcription	Colonic Mucosa	Colon
3	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:55744000-55767800	Weak transcription	K562	blood
5	chr14:55744800-55767800	Weak transcription	Pancreas	Pancrea
6	chr14:55745000-55768400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:55745000-55774000	Weak transcription	Liver	Liver
8	chr14:55745200-55778400	Weak transcription	Fetal Thymus	thymus
9	chr14:55745600-55769200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr14:55747400-55768400	Weak transcription	NHLF	lung
11	chr14:55748000-55770000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:55749400-55769800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:55752600-55768200	Weak transcription	HSMM	muscle
14	chr14:55754400-55768400	Weak transcription	NHDF-Ad	bronchial
15	chr14:55754800-55778800	Weak transcription	Hela-S3	cervix
16	chr14:55755000-55770600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:55755000-55774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:55755200-55768000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:55755800-55768400	Weak transcription	Fetal Brain Female	brain
20	chr14:55756400-55779000	Weak transcription	Gastric	stomach
21	chr14:55757000-55767000	Weak transcription	Psoas Muscle	Psoas
22	chr14:55758800-55769600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr14:55759400-55768600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:55760400-55768400	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:55761200-55768400	Weak transcription	Ovary	ovary
26	chr14:55761200-55773200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:55761600-55768400	Weak transcription	HSMMtube	muscle
28	chr14:55761800-55768600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:55761800-55772400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:55762000-55768000	Weak transcription	Small Intestine	intestine
31	chr14:55762000-55778200	Weak transcription	Placenta	Placenta
32	chr14:55762600-55768600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:55763400-55771200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:55763600-55767800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:55764000-55768400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:55764400-55767600	Weak transcription	Fetal Heart	heart
37	chr14:55764400-55768200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:55764400-55768200	Weak transcription	Brain Substantia Nigra	brain
39	chr14:55764400-55768400	Weak transcription	Brain Angular Gyrus	brain
40	chr14:55764400-55768400	Weak transcription	Brain Anterior Caudate	brain
41	chr14:55764400-55773800	Weak transcription	Fetal Lung	lung
42	chr14:55764600-55768200	Weak transcription	Osteobl	bone
43	chr14:55764600-55768400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr14:55764600-55768600	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:55764800-55767800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:55764800-55767800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:55764800-55768200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:55764800-55768200	Weak transcription	A549	lung
49	chr14:55764800-55768600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr14:55764800-55769800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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