Variant report

Variant	rs74050975
Chromosome Location	chr14:55812050-55812051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55811214..55813889-chr14:55823159..55825575,2	MCF-7	breast:
2	chr14:55656157..55658441-chr14:55811661..55813626,2	K562	blood:
3	chr14:55737988..55740346-chr14:55809707..55813247,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000126787	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10130894	1.00[EUR][1000 genomes]
rs10134937	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135891	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138838	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10144869	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146943	0.87[EUR][1000 genomes]
rs10149926	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162552	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220441	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10483640	0.86[EUR][1000 genomes]
rs11844441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379398	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379420	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128323	0.86[EUR][1000 genomes]
rs17128370	0.86[EUR][1000 genomes]
rs17128434	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17128438	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2050669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065998	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28379450	1.00[EUR][1000 genomes]
rs28661252	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28787988	0.87[EUR][1000 genomes]
rs28883964	0.87[EUR][1000 genomes]
rs4334208	0.85[AMR][1000 genomes]
rs56042503	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57612384	0.87[EUR][1000 genomes]
rs59155162	0.87[EUR][1000 genomes]
rs60023093	0.86[EUR][1000 genomes]
rs60204830	0.86[EUR][1000 genomes]
rs61662514	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7142831	0.86[EUR][1000 genomes]
rs7145502	0.86[EUR][1000 genomes]
rs7147172	0.87[EUR][1000 genomes]
rs7148663	0.87[EUR][1000 genomes]
rs7153958	0.87[EUR][1000 genomes]
rs7155704	0.86[EUR][1000 genomes]
rs7155729	0.86[EUR][1000 genomes]
rs7160642	0.86[EUR][1000 genomes]
rs7160753	0.86[EUR][1000 genomes]
rs74050958	0.86[EUR][1000 genomes]
rs74050963	1.00[EUR][1000 genomes]
rs74050968	0.87[EUR][1000 genomes]
rs74053904	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8007038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016444	0.86[EUR][1000 genomes]
rs8016716	0.86[EUR][1000 genomes]
rs8021377	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323282	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs946058	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55779200-55817600	Weak transcription	Hela-S3	cervix
2	chr14:55780800-55817200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:55782000-55817200	Weak transcription	HSMM	muscle
4	chr14:55791800-55817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55798200-55817200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:55800000-55817200	Weak transcription	Dnd41	blood
7	chr14:55800600-55816200	Weak transcription	Primary B cells from cord blood	blood
8	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:55801000-55817200	Weak transcription	HepG2	liver
10	chr14:55801200-55817200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:55801200-55817200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:55801200-55817200	Weak transcription	Liver	Liver
13	chr14:55801200-55817200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
15	chr14:55801400-55817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:55801400-55817400	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:55801600-55817200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:55802200-55817000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:55802200-55817400	Weak transcription	Fetal Intestine Small	intestine
20	chr14:55803400-55817200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:55803400-55817200	Weak transcription	Placenta	Placenta
22	chr14:55803600-55817200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:55805200-55813600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:55805200-55817200	Weak transcription	Fetal Intestine Large	intestine
25	chr14:55805400-55812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr14:55805800-55817600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:55806600-55817000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:55806800-55815600	Weak transcription	Fetal Kidney	kidney
29	chr14:55806800-55820800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:55807000-55813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:55807000-55813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:55807000-55816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:55807000-55817000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:55807000-55817200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr14:55807000-55817600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:55807200-55812200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:55807200-55813000	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:55807200-55813600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr14:55807200-55815600	Weak transcription	HMEC	breast
40	chr14:55807200-55817200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:55807200-55817200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:55807200-55817600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:55807200-55817600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:55807200-55817800	Weak transcription	HSMMtube	muscle
45	chr14:55807400-55813800	Weak transcription	Lung	lung
46	chr14:55807400-55817200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:55807400-55817200	Weak transcription	Esophagus	oesophagus
48	chr14:55807400-55817200	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:55807400-55817200	Weak transcription	Fetal Stomach	stomach
50	chr14:55807400-55817200	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links