Variant report

Variant	rs11844441
Chromosome Location	chr14:55799047-55799048
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10130894	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10134937	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135891	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138838	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10144869	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10149926	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162552	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220441	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10483640	0.86[EUR][1000 genomes]
rs11851023	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379398	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379420	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128323	0.86[EUR][1000 genomes]
rs17128370	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17128434	1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17128438	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2050669	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065998	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28379450	1.00[EUR][1000 genomes]
rs28661252	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28787988	0.87[EUR][1000 genomes]
rs28883964	0.87[EUR][1000 genomes]
rs4334208	0.85[AMR][1000 genomes]
rs56042503	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57612384	0.87[EUR][1000 genomes]
rs59155162	0.87[EUR][1000 genomes]
rs60023093	0.86[EUR][1000 genomes]
rs60204830	0.86[EUR][1000 genomes]
rs61662514	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7142831	0.86[EUR][1000 genomes]
rs7145502	0.86[EUR][1000 genomes]
rs7147172	0.87[EUR][1000 genomes]
rs7148663	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7153958	0.87[EUR][1000 genomes]
rs7155704	0.86[EUR][1000 genomes]
rs7155729	0.86[EUR][1000 genomes]
rs7160642	0.86[EUR][1000 genomes]
rs7160753	0.86[EUR][1000 genomes]
rs74050958	0.86[EUR][1000 genomes]
rs74050963	1.00[EUR][1000 genomes]
rs74050968	0.87[EUR][1000 genomes]
rs74050975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74053904	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8007038	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016444	0.86[EUR][1000 genomes]
rs8016716	0.86[EUR][1000 genomes]
rs8021377	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323282	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs946058	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3405710	chr14:55797224-55800072	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3429893	chr14:55797549-55799747	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55777400-55799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:55779200-55817600	Weak transcription	Hela-S3	cervix
3	chr14:55779600-55799600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:55779600-55801200	Weak transcription	Esophagus	oesophagus
5	chr14:55779800-55800800	Weak transcription	Adipose Nuclei	Adipose
6	chr14:55780200-55807800	Weak transcription	Thymus	Thymus
7	chr14:55780600-55800600	Weak transcription	NHEK	skin
8	chr14:55780600-55806200	Weak transcription	HMEC	breast
9	chr14:55780800-55799400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:55780800-55800800	Weak transcription	Lung	lung
11	chr14:55780800-55817200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:55781400-55799600	Weak transcription	NH-A	brain
13	chr14:55782000-55817200	Weak transcription	HSMM	muscle
14	chr14:55783200-55799400	Weak transcription	Fetal Thymus	thymus
15	chr14:55783600-55799400	Weak transcription	Pancreas	Pancrea
16	chr14:55783600-55800800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:55783800-55799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:55784000-55799800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:55784200-55801200	Weak transcription	Fetal Stomach	stomach
20	chr14:55784600-55799400	Weak transcription	HSMMtube	muscle
21	chr14:55784600-55800800	Weak transcription	Gastric	stomach
22	chr14:55784800-55799600	Weak transcription	Fetal Kidney	kidney
23	chr14:55785800-55799200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:55786800-55803000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:55787200-55806600	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:55788600-55799400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:55788800-55800800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:55790400-55806800	Weak transcription	Aorta	Aorta
29	chr14:55790800-55799400	Weak transcription	Left Ventricle	heart
30	chr14:55791800-55800200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:55791800-55817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:55793000-55808600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:55793200-55800800	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:55794000-55801000	Weak transcription	Right Ventricle	heart
35	chr14:55794000-55801200	Weak transcription	Spleen	Spleen
36	chr14:55794000-55811800	Weak transcription	Brain Anterior Caudate	brain
37	chr14:55794400-55803000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr14:55795000-55806600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:55795200-55799400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:55795400-55799200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:55795400-55800800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:55795400-55800800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr14:55795400-55801000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:55795600-55799400	Weak transcription	Psoas Muscle	Psoas
45	chr14:55795600-55799600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:55795800-55799600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:55797600-55799400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:55797600-55799600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:55797600-55799600	Weak transcription	Ovary	ovary
50	chr14:55797600-55799600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links