Variant report

Variant	rs10138838
Chromosome Location	chr14:55782328-55782329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55775205..55778244-chr14:55782229..55785495,4	MCF-7	breast:
2	chr14:55735907..55739528-chr14:55781746..55784887,4	MCF-7	breast:
3	chr14:55775251..55779667-chr14:55780270..55783872,4	K562	blood:
4	chr14:55777470..55779431-chr14:55780841..55782383,2	K562	blood:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10130894	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10134937	0.86[EUR][1000 genomes]
rs10135891	0.86[EUR][1000 genomes]
rs10144869	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10149926	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162552	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10220441	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11844441	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11845802	0.83[EUR][1000 genomes]
rs11850516	0.86[EUR][1000 genomes]
rs11851023	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379398	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379420	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17128370	0.92[AFR][1000 genomes]
rs17128434	0.86[EUR][1000 genomes]
rs17128438	1.00[EUR][1000 genomes]
rs2050669	0.86[EUR][1000 genomes]
rs2065998	0.86[EUR][1000 genomes]
rs2075598	0.86[EUR][1000 genomes]
rs2341536	0.86[EUR][1000 genomes]
rs28379450	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28661252	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28787988	0.93[AMR][1000 genomes]
rs4334208	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61662514	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573004	0.86[EUR][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7152543	0.86[EUR][1000 genomes]
rs7153322	0.86[EUR][1000 genomes]
rs74050920	0.83[EUR][1000 genomes]
rs74050963	0.86[EUR][1000 genomes]
rs74050975	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74053904	0.86[EUR][1000 genomes]
rs8007038	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8010853	0.85[AFR][1000 genomes]
rs8021377	0.86[EUR][1000 genomes]
rs946058	0.86[EUR][1000 genomes]
rs9652341	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55768600-55783800	Weak transcription	Right Ventricle	heart
2	chr14:55768800-55786400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:55770800-55783800	Weak transcription	Fetal Kidney	kidney
4	chr14:55773600-55783000	Weak transcription	Pancreas	Pancrea
5	chr14:55775000-55783000	Weak transcription	Left Ventricle	heart
6	chr14:55776600-55786600	Weak transcription	Fetal Brain Male	brain
7	chr14:55777000-55792800	Weak transcription	Brain Angular Gyrus	brain
8	chr14:55777000-55795000	Weak transcription	NHDF-Ad	bronchial
9	chr14:55777200-55783800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:55777200-55799000	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:55777400-55782600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr14:55777400-55795000	Weak transcription	Osteobl	bone
13	chr14:55777400-55799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:55778000-55782600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:55778200-55785200	Weak transcription	Small Intestine	intestine
16	chr14:55778400-55782400	Weak transcription	Stomach Mucosa	stomach
17	chr14:55779200-55793800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:55779200-55798800	Weak transcription	K562	blood
19	chr14:55779200-55817600	Weak transcription	Hela-S3	cervix
20	chr14:55779400-55783800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:55779600-55782400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:55779600-55782400	Weak transcription	Aorta	Aorta
23	chr14:55779600-55783000	Weak transcription	Fetal Stomach	stomach
24	chr14:55779600-55783600	Weak transcription	Gastric	stomach
25	chr14:55779600-55783800	Weak transcription	Colonic Mucosa	Colon
26	chr14:55779600-55784400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:55779600-55789200	Weak transcription	HUVEC	blood vessel
28	chr14:55779600-55795200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:55779600-55796800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:55779600-55796800	Weak transcription	Ovary	ovary
31	chr14:55779600-55797200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:55779600-55799600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:55779600-55801200	Weak transcription	Esophagus	oesophagus
34	chr14:55779800-55787200	Weak transcription	Placenta	Placenta
35	chr14:55779800-55794400	Weak transcription	HepG2	liver
36	chr14:55779800-55794800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:55779800-55795400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:55779800-55800800	Weak transcription	Adipose Nuclei	Adipose
39	chr14:55780000-55783000	Weak transcription	HSMMtube	muscle
40	chr14:55780000-55797200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr14:55780000-55797800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:55780200-55783200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:55780200-55785600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:55780200-55790000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:55780200-55792600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:55780200-55793600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:55780200-55807800	Weak transcription	Thymus	Thymus
48	chr14:55780400-55790400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:55780400-55793600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr14:55780600-55782600	Weak transcription	Duodenum Mucosa	Duodenum

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