Variant report

Variant	rs11850516
Chromosome Location	chr14:55605355-55605356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10138838	0.86[EUR][1000 genomes]
rs10144869	0.85[ASN][1000 genomes]
rs10483640	0.85[ASN][1000 genomes]
rs10498474	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128230	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs1886784	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs2075598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274272	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848305	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.86[EUR][1000 genomes]
rs56192604	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.82[ASN][1000 genomes]
rs60204830	0.85[ASN][1000 genomes]
rs60715972	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141563	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	0.85[ASN][1000 genomes]
rs7145502	0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.85[ASN][1000 genomes]
rs7155936	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157585	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7159530	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160575	0.85[ASN][1000 genomes]
rs7160642	0.85[ASN][1000 genomes]
rs7160753	0.85[ASN][1000 genomes]
rs7161564	0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.87[AMR][1000 genomes]
rs74050921	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050928	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009009	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	0.97[ASN][1000 genomes]
rs8010751	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.90[ASN][1000 genomes]
rs8011980	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	0.85[ASN][1000 genomes]
rs8017821	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:55596600-55606400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55597200-55606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:55597200-55607400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:55598400-55607600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:55598600-55607800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:55598800-55605800	Weak transcription	HepG2	liver
11	chr14:55598800-55606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:55598800-55606600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:55598800-55610800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:55599200-55607600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr14:55599600-55606400	Weak transcription	Dnd41	blood
18	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
19	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:55600800-55609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:55601600-55607000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:55601600-55610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:55602600-55606000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
24	chr14:55602600-55606800	Genic enhancers	Stomach Mucosa	stomach
25	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:55603200-55607600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
28	chr14:55603600-55606800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr14:55604000-55606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
31	chr14:55604200-55605600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr14:55604200-55605800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:55604200-55613000	Weak transcription	Liver	Liver
34	chr14:55604400-55606400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:55604400-55607400	Weak transcription	Pancreas	Pancrea
36	chr14:55604400-55608200	Genic enhancers	Fetal Intestine Small	intestine
37	chr14:55604400-55608400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:55604400-55610400	Genic enhancers	Fetal Intestine Large	intestine
39	chr14:55604400-55611800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:55604400-55615600	Strong transcription	HSMM	muscle
41	chr14:55604400-55615800	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr14:55604400-55620800	Weak transcription	K562	blood
43	chr14:55604600-55605400	Enhancers	Brain Substantia Nigra	brain
44	chr14:55604600-55606000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:55604600-55606000	Genic enhancers	Right Ventricle	heart
46	chr14:55604600-55606200	Genic enhancers	Rectal Mucosa Donor 31	rectum
47	chr14:55604600-55606400	Weak transcription	Aorta	Aorta
48	chr14:55604600-55609600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr14:55604600-55611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr14:55604600-55613400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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