Variant report

Variant	rs74050921
Chromosome Location	chr14:55608016-55608017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55573704..55575729-chr14:55607371..55609578,2	MCF-7	breast:
2	chr14:55607540..55609514-chr14:55612298..55615011,2	MCF-7	breast:
3	chr14:55526794..55528357-chr14:55606390..55608686,2	MCF-7	breast:
4	chr14:55606982..55609476-chr9:111146186..111147743,2	MCF-7	breast:
5	chr14:55597715..55602179-chr14:55607312..55610754,5	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10144869	0.85[ASN][1000 genomes]
rs10483640	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10498474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850516	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128230	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs1886784	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs1952086	0.85[AFR][1000 genomes]
rs2075598	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274272	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848305	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56192604	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.82[ASN][1000 genomes]
rs60204830	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60715972	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573004	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141563	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	0.85[ASN][1000 genomes]
rs7145502	0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148957	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153651	0.81[AFR][1000 genomes]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7155936	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.97[ASN][1000 genomes]
rs7157585	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7159530	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160575	0.85[ASN][1000 genomes]
rs7160642	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7160753	0.85[ASN][1000 genomes]
rs7161564	0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74050928	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009009	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	0.97[ASN][1000 genomes]
rs8010751	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.90[ASN][1000 genomes]
rs8011980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	0.85[ASN][1000 genomes]
rs8017821	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55598800-55610800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
8	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:55600800-55609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:55601600-55610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
13	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
14	chr14:55604200-55613000	Weak transcription	Liver	Liver
15	chr14:55604400-55608200	Genic enhancers	Fetal Intestine Small	intestine
16	chr14:55604400-55608400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:55604400-55610400	Genic enhancers	Fetal Intestine Large	intestine
18	chr14:55604400-55611800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:55604400-55615600	Strong transcription	HSMM	muscle
20	chr14:55604400-55615800	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr14:55604400-55620800	Weak transcription	K562	blood
22	chr14:55604600-55609600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:55604600-55611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:55604600-55613400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:55604600-55613400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:55604600-55615200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:55604600-55615400	Strong transcription	NHEK	skin
28	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:55604800-55608800	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr14:55604800-55610200	Strong transcription	GM12878-XiMat	blood
31	chr14:55604800-55614800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:55604800-55616200	Strong transcription	HMEC	breast
33	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
34	chr14:55605000-55609800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:55605000-55611800	Strong transcription	Colonic Mucosa	Colon
36	chr14:55605000-55612000	Strong transcription	HSMMtube	muscle
37	chr14:55605000-55613400	Strong transcription	Placenta	Placenta
38	chr14:55605000-55614200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:55605000-55614200	Strong transcription	Thymus	Thymus
40	chr14:55605000-55614600	Strong transcription	NHDF-Ad	bronchial
41	chr14:55605000-55614800	Strong transcription	NH-A	brain
42	chr14:55605000-55616600	Strong transcription	Osteobl	bone
43	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:55605200-55608200	Strong transcription	Esophagus	oesophagus
45	chr14:55605200-55608400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:55605200-55608800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:55605200-55608800	Strong transcription	Colon Smooth Muscle	Colon
48	chr14:55605200-55608800	Strong transcription	Fetal Muscle Leg	muscle
49	chr14:55605200-55609000	Strong transcription	A549	lung
50	chr14:55605200-55609600	Weak transcription	Brain Angular Gyrus	brain

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