Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10144869	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10498474	0.81[YRI][hapmap]
rs11851023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11851945	0.85[AFR][1000 genomes]
rs13379420	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17128230	0.83[YRI][hapmap]
rs17128262	0.82[YRI][hapmap]
rs17128292	0.81[YRI][hapmap]
rs17128303	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1886784	0.82[YRI][hapmap]
rs2274272	0.83[YRI][hapmap]
rs3759666	0.82[YRI][hapmap]
rs55772085	0.84[AFR][1000 genomes]
rs7141706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7142831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7147666	0.84[AFR][1000 genomes]
rs7153418	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7155936	0.81[YRI][hapmap]
rs7160411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7160575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs74050921	0.81[AFR][1000 genomes]
rs74050928	0.83[AFR][1000 genomes]
rs8009009	0.84[AMR][1000 genomes]
rs8016444	1.00[CHB][hapmap]
rs8016716	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55662600-55671000	Weak transcription	Aorta	Aorta
2	chr14:55669000-55674400	Weak transcription	HepG2	liver

Quick Search: