Variant report

Variant	rs7160411
Chromosome Location	chr14:55679032-55679033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55678786..55680522-chr14:55737916..55739440,2	MCF-7	breast:
2	chr14:55678554..55682853-chr14:55737022..55740091,3	K562	blood:
3	chr14:55678337..55681530-chr14:55738296..55741228,5	K562	blood:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10134983	0.84[EUR][1000 genomes]
rs10139912	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144326	0.84[EUR][1000 genomes]
rs10144869	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10483640	0.94[ASN][1000 genomes]
rs10498475	1.00[CEU][hapmap]
rs11845284	0.80[EUR][1000 genomes]
rs11845848	0.84[EUR][1000 genomes]
rs11851023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11851945	0.82[ASN][1000 genomes]
rs12323804	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13379158	0.84[EUR][1000 genomes]
rs13379420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17128262	0.82[CHD][hapmap]
rs17128275	0.82[ASN][1000 genomes]
rs17128277	0.82[ASN][1000 genomes]
rs17128292	0.82[ASN][1000 genomes]
rs17128303	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17128323	0.94[ASN][1000 genomes]
rs17671923	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17672376	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17672950	1.00[CEU][hapmap]
rs17673930	1.00[CEU][hapmap]
rs17675052	1.00[CEU][hapmap]
rs17740413	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17741681	1.00[CEU][hapmap]
rs17741825	1.00[CEU][hapmap]
rs17742621	0.80[CEU][hapmap]
rs1886784	0.82[CHD][hapmap]
rs1952086	0.88[ASN][1000 genomes]
rs2075598	0.82[CHD][hapmap]
rs2094103	0.84[EUR][1000 genomes]
rs2274271	0.89[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs28408795	0.82[ASN][1000 genomes]
rs28883964	0.94[ASN][1000 genomes]
rs2985914	0.91[ASN][1000 genomes]
rs3759666	0.82[CHD][hapmap]
rs4334208	0.91[ASN][1000 genomes]
rs55912862	0.88[ASN][1000 genomes]
rs56192604	0.82[ASN][1000 genomes]
rs57612384	0.94[ASN][1000 genomes]
rs58737648	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59155162	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs60023093	0.91[ASN][1000 genomes]
rs60204830	0.94[ASN][1000 genomes]
rs60549793	0.82[ASN][1000 genomes]
rs60715972	0.94[ASN][1000 genomes]
rs6573008	0.80[CEU][hapmap]
rs7141563	0.82[ASN][1000 genomes]
rs7141706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7145502	0.94[ASN][1000 genomes]
rs7147172	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7147666	0.82[ASN][1000 genomes]
rs7153418	0.94[ASN][1000 genomes]
rs7153651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7153958	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7154368	0.82[ASN][1000 genomes]
rs7155704	0.94[ASN][1000 genomes]
rs7155729	0.94[ASN][1000 genomes]
rs7155936	0.82[ASN][1000 genomes]
rs7157585	0.82[ASN][1000 genomes]
rs7159490	0.89[CEU][hapmap];0.86[TSI][hapmap]
rs7160575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7160642	0.94[ASN][1000 genomes]
rs7160753	0.94[ASN][1000 genomes]
rs74050932	0.82[ASN][1000 genomes]
rs74050939	0.94[ASN][1000 genomes]
rs74050958	0.94[ASN][1000 genomes]
rs74050963	0.86[ASN][1000 genomes]
rs8009060	0.82[ASN][1000 genomes]
rs8010751	0.82[ASN][1000 genomes]
rs8010791	0.82[ASN][1000 genomes]
rs8010993	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8012397	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8016444	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs8016716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8017821	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7160411	KTN1	cis	multi-tissue	Pritchard
rs7160411	MAPK1IP1L	cis	cerebellum	SCAN
rs7160411	L2HGDH	cis	cerebellum	SCAN
rs7160411	FBXO34	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55677600-55679800	Weak transcription	Right Atrium	heart

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