Variant report

Variant	rs17740413
Chromosome Location	chr14:55728775-55728776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55727647..55729391-chr14:55818839..55821445,2	MCF-7	breast:
2	chr14:55728321..55735089-chr14:55735819..55739586,10	K562	blood:
3	chr14:55727113..55735518-chr14:55736186..55741884,14	K562	blood:
4	chr14:55728719..55731399-chr14:55736825..55739214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10140881	0.80[EUR][1000 genomes]
rs10483641	0.89[CEU][hapmap]
rs10498475	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11125	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11844443	0.80[EUR][1000 genomes]
rs17128484	0.82[CEU][hapmap]
rs17671923	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672376	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672950	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17673930	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17675052	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741681	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741825	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17742621	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs17743484	0.89[CEU][hapmap]
rs1959443	0.89[CEU][hapmap]
rs2274271	0.89[CEU][hapmap]
rs28547246	0.80[EUR][1000 genomes]
rs28676392	0.80[EUR][1000 genomes]
rs35070799	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41299199	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41437744	0.89[CEU][hapmap]
rs45513892	1.00[AFR][1000 genomes]
rs60505634	1.00[ASN][1000 genomes]
rs6573008	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs713473	0.89[CEU][hapmap]
rs713475	0.89[CEU][hapmap]
rs7141706	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7159490	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs7160411	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72717745	1.00[ASN][1000 genomes]
rs72717751	1.00[ASN][1000 genomes]
rs72717752	1.00[ASN][1000 genomes]
rs72717759	1.00[ASN][1000 genomes]
rs8003961	0.80[EUR][1000 genomes]
rs8012105	0.80[EUR][1000 genomes]
rs8012397	1.00[CEU][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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