Variant report

Variant	rs17671923
Chromosome Location	chr14:55663918-55663919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55658532..55660880-chr14:55663249..55664893,2	MCF-7	breast:
2	chr14:55657344..55659337-chr14:55662940..55664641,2	K562	blood:
3	chr14:55662245..55664403-chr14:55736553..55739431,2	K562	blood:

Variant related genes	Relation type
ENSG00000126787	Chromatin interaction
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10140881	0.87[EUR][1000 genomes]
rs10498475	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11844443	0.87[EUR][1000 genomes]
rs17672376	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672950	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17673930	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17675052	1.00[CEU][hapmap]
rs17740413	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17741681	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741825	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17742621	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs2274271	0.89[CEU][hapmap]
rs28547246	0.87[EUR][1000 genomes]
rs28676392	0.87[EUR][1000 genomes]
rs35070799	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41299199	1.00[ASN][1000 genomes]
rs45513892	1.00[AFR][1000 genomes]
rs58737648	0.83[EUR][1000 genomes]
rs6573008	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs7141706	1.00[CEU][hapmap]
rs7159490	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs7160411	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72717745	1.00[ASN][1000 genomes]
rs8003961	0.87[EUR][1000 genomes]
rs8010993	0.86[EUR][1000 genomes]
rs8012105	0.87[EUR][1000 genomes]
rs8012397	1.00[CEU][hapmap]
rs8017256	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:55662200-55667200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:55662400-55667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:55662400-55667800	Weak transcription	HepG2	liver
5	chr14:55662600-55671000	Weak transcription	Aorta	Aorta

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