Variant report

Variant	rs11125
Chromosome Location	chr14:55611839-55611840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55594129..55597123-chr14:55609218..55612175,4	MCF-7	breast:
2	chr14:55611177..55614078-chr14:55617214..55618748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10140881	0.87[EUR][1000 genomes]
rs10498475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844443	0.87[EUR][1000 genomes]
rs17671923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17672376	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17672950	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17740413	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28547246	0.87[EUR][1000 genomes]
rs28676392	0.87[EUR][1000 genomes]
rs45513892	1.00[AFR][1000 genomes]
rs58737648	0.83[EUR][1000 genomes]
rs6573008	0.87[EUR][1000 genomes]
rs7159490	0.87[EUR][1000 genomes]
rs8003961	0.87[EUR][1000 genomes]
rs8010993	0.86[EUR][1000 genomes]
rs8012105	0.87[EUR][1000 genomes]
rs8012397	0.81[EUR][1000 genomes]
rs8017256	0.84[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
6	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
8	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
9	chr14:55604200-55613000	Weak transcription	Liver	Liver
10	chr14:55604400-55615600	Strong transcription	HSMM	muscle
11	chr14:55604400-55615800	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr14:55604400-55620800	Weak transcription	K562	blood
13	chr14:55604600-55613400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:55604600-55613400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:55604600-55615200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:55604600-55615400	Strong transcription	NHEK	skin
17	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:55604800-55614800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:55604800-55616200	Strong transcription	HMEC	breast
20	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
21	chr14:55605000-55612000	Strong transcription	HSMMtube	muscle
22	chr14:55605000-55613400	Strong transcription	Placenta	Placenta
23	chr14:55605000-55614200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:55605000-55614200	Strong transcription	Thymus	Thymus
25	chr14:55605000-55614600	Strong transcription	NHDF-Ad	bronchial
26	chr14:55605000-55614800	Strong transcription	NH-A	brain
27	chr14:55605000-55616600	Strong transcription	Osteobl	bone
28	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:55605200-55612000	Strong transcription	Lung	lung
30	chr14:55605200-55612000	Strong transcription	Ovary	ovary
31	chr14:55605200-55613000	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:55605200-55614000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:55605200-55614000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr14:55605200-55614000	Strong transcription	NHLF	lung
35	chr14:55605200-55614400	Strong transcription	Fetal Muscle Trunk	muscle
36	chr14:55605200-55614600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:55605400-55612400	Weak transcription	Brain Substantia Nigra	brain
39	chr14:55605400-55614000	Strong transcription	Rectal Smooth Muscle	rectum
40	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
41	chr14:55605800-55615200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:55606000-55613400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:55606000-55613400	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:55606000-55613600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:55606000-55614800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr14:55606000-55614800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr14:55606200-55614200	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr14:55606200-55614200	Strong transcription	Adipose Nuclei	Adipose
49	chr14:55606200-55614200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:55606400-55614200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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