Variant report

Variant	rs35070799
Chromosome Location	chr14:55818403-55818404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55812369..55814760-chr14:55818097..55821866,3	MCF-7	breast:
2	chr14:55736450..55738716-chr14:55817481..55820238,2	K562	blood:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17671923	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17672376	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17672950	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17673930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17675052	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17740413	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17741825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17742621	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41299199	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41437744	1.00[AFR][1000 genomes]
rs60505634	1.00[ASN][1000 genomes]
rs72717745	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72717751	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72717752	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72717759	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323280	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
3	chr14:55806800-55820800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:55811200-55820600	Weak transcription	Fetal Heart	heart
6	chr14:55813600-55837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:55814000-55830400	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
9	chr14:55815400-55820600	Weak transcription	Psoas Muscle	Psoas
10	chr14:55816000-55837200	Weak transcription	K562	blood
11	chr14:55816200-55820600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:55816400-55823600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:55816600-55819600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:55816600-55823000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr14:55817000-55819200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:55817000-55819400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr14:55817000-55819400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:55817000-55819600	Strong transcription	Primary T cells from cord blood	blood
19	chr14:55817000-55819600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:55817000-55819600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:55817000-55819800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:55817000-55819800	Strong transcription	Thymus	Thymus
23	chr14:55817000-55820000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:55817000-55820000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:55817000-55820000	Strong transcription	Osteobl	bone
26	chr14:55817000-55820200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:55817000-55821000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr14:55817000-55822800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:55817200-55818800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:55817200-55818800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:55817200-55818800	Strong transcription	Brain Substantia Nigra	brain
32	chr14:55817200-55818800	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:55817200-55819000	Strong transcription	NH-A	brain
34	chr14:55817200-55819200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:55817200-55819200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:55817200-55819200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:55817200-55819200	Strong transcription	Rectal Smooth Muscle	rectum
38	chr14:55817200-55819200	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:55817200-55819200	Strong transcription	HUVEC	blood vessel
40	chr14:55817200-55819200	Strong transcription	NHEK	skin
41	chr14:55817200-55819200	Strong transcription	NHLF	lung
42	chr14:55817200-55819400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:55817200-55819400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:55817200-55819400	Strong transcription	Adipose Nuclei	Adipose
45	chr14:55817200-55819400	Strong transcription	Brain Anterior Caudate	brain
46	chr14:55817200-55819400	Strong transcription	Brain Cingulate Gyrus	brain
47	chr14:55817200-55819400	Strong transcription	HepG2	liver
48	chr14:55817200-55819600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr14:55817200-55819600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:55817200-55819600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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