Variant report

Variant	rs10139912
Chromosome Location	chr14:55712399-55712400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:55712347-55712861	MCF-7	breast:	n/a	n/a
2	RAD21	chr14:55712311-55712834	MCF-7	breast:	n/a	n/a
3	CTCF	chr14:55712398-55712682	A549	lung:	n/a	n/a
4	CTCF	chr14:55712383-55712759	A549	lung:	n/a	n/a
5	RAD21	chr14:55712358-55712820	A549	lung:	n/a	n/a
6	CTCF	chr14:55712349-55712701	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr14:55712399-55712790	K562	blood:	n/a	n/a
8	MYC	chr14:55712365-55712726	MCF10A-Er-Src	breast:	n/a	n/a
9	RAD21	chr14:55712278-55713051	SK-N-SH	brain:	n/a	n/a
10	RAD21	chr14:55712261-55712824	HCT-116	colon:	n/a	n/a
11	RAD21	chr14:55712373-55712808	HepG2	liver:	n/a	n/a
12	SMC3	chr14:55712211-55712862	SK-N-SH	brain:	n/a	n/a
13	CTCF	chr14:55712338-55712868	MCF-7	breast:	n/a	n/a
14	RAD21	chr14:55712381-55712694	SK-N-SH_RA	brain:	n/a	n/a
15	CTCF	chr14:55712335-55712953	HCT-116	colon:	n/a	n/a
16	CTCF	chr14:55712385-55712768	GM12878	blood:	n/a	n/a
17	CTCF	chr14:55712339-55712821	HCT-116	colon:	n/a	n/a
18	RAD21	chr14:55712375-55712670	GM12878	blood:	n/a	n/a
19	CTCF	chr14:55712175-55712784	IMR90	lung:	n/a	n/a
20	CTCF	chr14:55712300-55712450	WI-38	lung:	n/a	n/a
21	CTCF	chr14:55712394-55712687	HepG2	liver:	n/a	n/a
22	CTCF	chr14:55712340-55712914	MCF-7	breast:	n/a	n/a
23	SMC3	chr14:55712369-55712766	GM12878	blood:	n/a	n/a
24	RAD21	chr14:55712329-55712850	HCT-116	colon:	n/a	n/a
25	CTCF	chr14:55712171-55712985	A549	lung:	n/a	n/a
26	RAD21	chr14:55712333-55712737	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr14:55712040-55712942	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55706022..55708410-chr14:55710949..55713300,2	K562	blood:
2	chr14:55709704..55712679-chr14:55737747..55740445,2	K562	blood:
3	chr14:55706701..55708410-chr14:55710949..55712624,2	K562	blood:
4	chr14:55710760..55712909-chr14:55714004..55716438,2	K562	blood:
5	chr14:55712140..55713012-chr14:55821024..55821977,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000271180	TF binding region
ENSG00000271180	Chromatin interaction
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

rs_ID	r²[population]
rs10144869	0.94[ASN][1000 genomes]
rs10483640	0.94[ASN][1000 genomes]
rs11845284	0.89[EUR][1000 genomes]
rs11851023	0.94[ASN][1000 genomes]
rs11851945	0.82[ASN][1000 genomes]
rs12323804	0.94[ASN][1000 genomes]
rs13379420	0.91[ASN][1000 genomes]
rs17128275	0.82[ASN][1000 genomes]
rs17128277	0.82[ASN][1000 genomes]
rs17128292	0.82[ASN][1000 genomes]
rs17128303	0.94[ASN][1000 genomes]
rs17128323	0.94[ASN][1000 genomes]
rs1952086	0.88[ASN][1000 genomes]
rs28408795	0.82[ASN][1000 genomes]
rs28883964	0.94[ASN][1000 genomes]
rs2985914	0.91[ASN][1000 genomes]
rs4334208	0.91[ASN][1000 genomes]
rs55912862	0.88[ASN][1000 genomes]
rs56192604	0.82[ASN][1000 genomes]
rs57612384	0.94[ASN][1000 genomes]
rs58737648	0.88[ASN][1000 genomes]
rs59155162	0.94[ASN][1000 genomes]
rs60023093	0.91[ASN][1000 genomes]
rs60204830	0.94[ASN][1000 genomes]
rs60549793	0.82[ASN][1000 genomes]
rs60715972	0.94[ASN][1000 genomes]
rs7141563	0.82[ASN][1000 genomes]
rs7141706	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142831	0.94[ASN][1000 genomes]
rs7145502	0.94[ASN][1000 genomes]
rs7147172	0.94[ASN][1000 genomes]
rs7147666	0.82[ASN][1000 genomes]
rs7153418	0.94[ASN][1000 genomes]
rs7153958	0.94[ASN][1000 genomes]
rs7154368	0.82[ASN][1000 genomes]
rs7155704	0.94[ASN][1000 genomes]
rs7155729	0.94[ASN][1000 genomes]
rs7155936	0.82[ASN][1000 genomes]
rs7157585	0.82[ASN][1000 genomes]
rs7160411	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160575	0.94[ASN][1000 genomes]
rs7160642	0.94[ASN][1000 genomes]
rs7160753	0.94[ASN][1000 genomes]
rs74050932	0.82[ASN][1000 genomes]
rs74050939	0.94[ASN][1000 genomes]
rs74050958	0.94[ASN][1000 genomes]
rs74050963	0.86[ASN][1000 genomes]
rs8009060	0.82[ASN][1000 genomes]
rs8009718	0.94[EUR][1000 genomes]
rs8010751	0.82[ASN][1000 genomes]
rs8010791	0.82[ASN][1000 genomes]
rs8010993	0.88[ASN][1000 genomes]
rs8013528	0.94[EUR][1000 genomes]
rs8016444	0.94[ASN][1000 genomes]
rs8016716	0.94[ASN][1000 genomes]
rs8017821	0.94[ASN][1000 genomes]

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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