Variant report
| Variant | rs60549793 |
|---|---|
| Chromosome Location | chr14:55701616-55701617 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:55679230..55681659-chr14:55700930..55702648,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10139912 | 0.82[ASN][1000 genomes] |
| rs10144869 | 0.82[ASN][1000 genomes] |
| rs10146943 | 0.82[AMR][1000 genomes] |
| rs10483640 | 0.82[ASN][1000 genomes] |
| rs11851023 | 0.82[ASN][1000 genomes] |
| rs12323804 | 0.82[ASN][1000 genomes] |
| rs17128303 | 0.82[ASN][1000 genomes] |
| rs17128323 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs28883964 | 0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs57612384 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59155162 | 0.82[ASN][1000 genomes] |
| rs60204830 | 0.82[ASN][1000 genomes] |
| rs60715972 | 0.82[ASN][1000 genomes] |
| rs7141706 | 0.82[ASN][1000 genomes] |
| rs7142831 | 0.82[ASN][1000 genomes] |
| rs7145502 | 0.82[ASN][1000 genomes] |
| rs7147172 | 0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7148663 | 0.82[AMR][1000 genomes] |
| rs7153418 | 0.82[ASN][1000 genomes] |
| rs7153958 | 0.82[ASN][1000 genomes] |
| rs7155704 | 0.82[ASN][1000 genomes] |
| rs7155729 | 0.82[ASN][1000 genomes] |
| rs7160411 | 0.82[ASN][1000 genomes] |
| rs7160575 | 0.82[ASN][1000 genomes] |
| rs7160642 | 0.82[ASN][1000 genomes] |
| rs7160753 | 0.82[ASN][1000 genomes] |
| rs74050939 | 0.82[ASN][1000 genomes] |
| rs74050958 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8016444 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8016716 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8017821 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv84739 | chr14:55701614-55701646 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:55701000-55704200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 2 | chr14:55701200-55704600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
