Variant report

Variant	rs60204830
Chromosome Location	chr14:55686048-55686049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55685972..55688495-chr14:55737944..55739722,2	MCF-7	breast:
2	chr14:55665869..55668002-chr14:55685179..55686916,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10130894	0.86[EUR][1000 genomes]
rs10134937	0.86[EUR][1000 genomes]
rs10135891	0.86[EUR][1000 genomes]
rs10139912	0.94[ASN][1000 genomes]
rs10144869	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149926	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162552	0.86[EUR][1000 genomes]
rs10483640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498474	0.85[ASN][1000 genomes]
rs11844441	0.86[EUR][1000 genomes]
rs11845802	0.83[EUR][1000 genomes]
rs11850516	0.85[ASN][1000 genomes]
rs11851023	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851945	0.88[ASN][1000 genomes]
rs12323804	1.00[ASN][1000 genomes]
rs13379398	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379420	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128230	0.85[ASN][1000 genomes]
rs17128262	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17128275	0.88[ASN][1000 genomes]
rs17128277	0.88[ASN][1000 genomes]
rs17128292	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17128303	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128323	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128434	0.86[EUR][1000 genomes]
rs1886784	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1887494	0.85[ASN][1000 genomes]
rs1952086	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050669	0.86[EUR][1000 genomes]
rs2065998	0.86[EUR][1000 genomes]
rs2075598	0.85[ASN][1000 genomes]
rs2274272	0.85[ASN][1000 genomes]
rs2341536	0.86[EUR][1000 genomes]
rs28379450	0.86[EUR][1000 genomes]
rs28408795	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28436894	0.82[ASN][1000 genomes]
rs28661252	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28681113	0.82[ASN][1000 genomes]
rs28883964	1.00[ASN][1000 genomes]
rs2985914	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3759666	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4334208	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55772085	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55848305	0.85[ASN][1000 genomes]
rs55912862	0.94[ASN][1000 genomes]
rs56192604	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56358335	0.85[ASN][1000 genomes]
rs57064758	0.85[ASN][1000 genomes]
rs57196783	0.85[ASN][1000 genomes]
rs57612384	1.00[ASN][1000 genomes]
rs57750925	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58737648	0.82[ASN][1000 genomes]
rs59155162	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59700273	0.82[ASN][1000 genomes]
rs60023093	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60549793	0.82[ASN][1000 genomes]
rs60715972	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61662514	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573004	0.85[ASN][1000 genomes]
rs7141563	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7141706	0.94[ASN][1000 genomes]
rs7142831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147172	1.00[ASN][1000 genomes]
rs7147666	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7148957	0.85[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.82[ASN][1000 genomes]
rs7150083	0.82[ASN][1000 genomes]
rs7152543	0.82[ASN][1000 genomes]
rs7153322	0.82[ASN][1000 genomes]
rs7153418	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7153958	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7154368	0.88[ASN][1000 genomes]
rs7155704	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155936	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7156997	0.82[ASN][1000 genomes]
rs7157000	0.82[ASN][1000 genomes]
rs7157585	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7159530	0.85[ASN][1000 genomes]
rs7160411	0.94[ASN][1000 genomes]
rs7160575	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161564	0.82[ASN][1000 genomes]
rs72716670	0.82[ASN][1000 genomes]
rs74050920	0.83[EUR][1000 genomes]
rs74050921	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs74050928	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74050932	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74050937	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74050939	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74050958	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050963	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74050975	0.86[EUR][1000 genomes]
rs74053904	0.86[EUR][1000 genomes]
rs8004899	0.82[ASN][1000 genomes]
rs8005218	0.82[ASN][1000 genomes]
rs8007038	0.86[EUR][1000 genomes]
rs8009060	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8009181	0.82[ASN][1000 genomes]
rs8010751	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8010791	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8010993	0.82[ASN][1000 genomes]
rs8011980	0.85[ASN][1000 genomes]
rs8016444	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016716	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017821	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8021377	0.86[EUR][1000 genomes]
rs946058	0.86[EUR][1000 genomes]
rs9652341	0.86[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55684800-55686800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:55685000-55686600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:55685000-55686800	Enhancers	HMEC	breast
4	chr14:55685200-55686200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:55685200-55686200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:55685200-55689000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:55685600-55686200	Enhancers	NHEK	skin
8	chr14:55685600-55687800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:55685600-55688400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:55685800-55686800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:55685800-55687200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:55685800-55687200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:55686000-55686400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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