Variant report

Variant	rs7159530
Chromosome Location	chr14:55594351-55594352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr14:55593960-55594774	Hela-S3	cervix:	n/a	n/a
2	RFX5	chr14:55593810-55594726	Hela-S3	cervix:	n/a	chr14:55594520-55594534 chr14:55594521-55594537 chr14:55594522-55594536 chr14:55594523-55594532
3	POLR2A	chr14:55594211-55594728	U87	brain:	n/a	n/a
4	GTF2F1	chr14:55593871-55594664	Hela-S3	cervix:	n/a	n/a
5	FOS	chr14:55594217-55594543	MCF10A-Er-Src	breast:	n/a	chr14:55594401-55594409 chr14:55594402-55594413 chr14:55594401-55594408
6	USF2	chr14:55593851-55594651	Hela-S3	cervix:	n/a	n/a
7	TFAP2C	chr14:55593813-55594783	Hela-S3	cervix:	n/a	n/a
8	FOS	chr14:55594002-55594751	Hela-S3	cervix:	n/a	chr14:55594401-55594409 chr14:55594402-55594413 chr14:55594401-55594408
9	EP300	chr14:55593847-55594808	Hela-S3	cervix:	n/a	n/a
10	MAZ	chr14:55594203-55594772	Hela-S3	cervix:	n/a	n/a
11	MAX	chr14:55594208-55594738	Hela-S3	cervix:	n/a	n/a
12	CEBPB	chr14:55593722-55594748	Hela-S3	cervix:	n/a	chr14:55594555-55594568
13	MAX	chr14:55593851-55594696	Hela-S3	cervix:	n/a	n/a
14	RCOR1	chr14:55593727-55594707	Hela-S3	cervix:	n/a	n/a
15	TFAP2A	chr14:55594083-55594774	Hela-S3	cervix:	n/a	n/a
16	CHD2	chr14:55594068-55594630	Hela-S3	cervix:	n/a	n/a
17	MYC	chr14:55593897-55594694	Hela-S3	cervix:	n/a	n/a
18	FOS	chr14:55594241-55594541	MCF10A-Er-Src	breast:	n/a	chr14:55594401-55594409 chr14:55594402-55594413 chr14:55594401-55594408
19	MXI1	chr14:55593861-55594672	Hela-S3	cervix:	n/a	n/a
20	EBF1	chr14:55594244-55594619	GM12878	blood:	n/a	chr14:55594431-55594442 chr14:55594432-55594441
21	PBX3	chr14:55594147-55594715	SK-N-SH	brain:	n/a	n/a
22	BRCA1	chr14:55593895-55594916	Hela-S3	cervix:	n/a	n/a
23	PRDM1	chr14:55594167-55594730	Hela-S3	cervix:	n/a	n/a
24	FOSL2	chr14:55594029-55594716	SK-N-SH	brain:	n/a	chr14:55594401-55594409 chr14:55594402-55594413 chr14:55594401-55594408
25	MYC	chr14:55594260-55594552	MCF10A-Er-Src	breast:	n/a	n/a
26	ELK1	chr14:55593962-55594485	Hela-S3	cervix:	n/a	n/a
27	MAFK	chr14:55593841-55594704	Hela-S3	cervix:	n/a	n/a
28	JUND	chr14:55593806-55594747	Hela-S3	cervix:	n/a	chr14:55594401-55594409 chr14:55594402-55594413 chr14:55594401-55594408
29	RAD21	chr14:55593783-55594661	Hela-S3	cervix:	n/a	n/a
30	TCF7L2	chr14:55593892-55594701	Hela-S3	cervix:	n/a	n/a
31	STAT3	chr14:55593889-55594761	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr14:55594219-55594728	U87	brain:	n/a	n/a
33	FOS	chr14:55594268-55594558	MCF10A-Er-Src	breast:	n/a	chr14:55594401-55594409 chr14:55594402-55594413 chr14:55594401-55594408
34	SMC3	chr14:55593799-55594711	Hela-S3	cervix:	n/a	n/a
35	MYC	chr14:55594215-55594552	MCF10A-Er-Src	breast:	n/a	n/a
36	TCF12	chr14:55594058-55594752	SK-N-SH	brain:	n/a	n/a
37	PBX3	chr14:55594090-55594735	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55518259..55522048-chr14:55593067..55596290,3	K562	blood:
2	chr14:55517037..55520851-chr14:55594266..55601656,13	MCF-7	breast:

Variant related genes	Relation type
LGALS3	TF binding region
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10144869	0.85[ASN][1000 genomes]
rs10483640	0.85[ASN][1000 genomes]
rs10498474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850516	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851023	0.85[ASN][1000 genomes]
rs11851945	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323804	0.85[ASN][1000 genomes]
rs13379420	0.82[ASN][1000 genomes]
rs17128230	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128262	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128275	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128277	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128292	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128303	0.85[ASN][1000 genomes]
rs17128323	0.85[ASN][1000 genomes]
rs1886784	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887494	0.93[ASN][1000 genomes]
rs2075598	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408795	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28436894	0.97[ASN][1000 genomes]
rs28681113	0.97[ASN][1000 genomes]
rs28883964	0.85[ASN][1000 genomes]
rs2985914	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759666	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334208	0.82[ASN][1000 genomes]
rs55673612	0.94[ASN][1000 genomes]
rs55772085	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912862	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56192604	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57064758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612384	0.85[ASN][1000 genomes]
rs57750925	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58737648	0.90[ASN][1000 genomes]
rs59155162	0.85[ASN][1000 genomes]
rs59700273	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60023093	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60204830	0.85[ASN][1000 genomes]
rs60715972	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573004	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141563	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142831	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7145502	0.85[ASN][1000 genomes]
rs7147172	0.85[ASN][1000 genomes]
rs7147666	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148957	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148959	0.83[EUR][1000 genomes]
rs7149385	0.97[ASN][1000 genomes]
rs7150083	0.97[ASN][1000 genomes]
rs7152543	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153322	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153418	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153958	0.85[ASN][1000 genomes]
rs7154368	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155704	0.85[ASN][1000 genomes]
rs7155729	0.85[ASN][1000 genomes]
rs7155936	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156997	0.97[ASN][1000 genomes]
rs7157000	0.97[ASN][1000 genomes]
rs7157585	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158989	0.88[ASN][1000 genomes]
rs7160575	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7160642	0.85[ASN][1000 genomes]
rs7160753	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7161564	0.97[ASN][1000 genomes]
rs72716670	0.97[ASN][1000 genomes]
rs74050920	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74050921	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050928	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74050932	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74050937	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74050939	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74050958	0.85[ASN][1000 genomes]
rs8004899	0.97[ASN][1000 genomes]
rs8005218	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009009	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009060	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009181	0.97[ASN][1000 genomes]
rs8010751	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010791	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010993	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8011980	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012397	0.83[ASN][1000 genomes]
rs8016444	0.85[ASN][1000 genomes]
rs8016716	0.85[ASN][1000 genomes]
rs8017821	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021832	0.90[ASN][1000 genomes]
rs8022101	0.94[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
3	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:55587000-55595600	Enhancers	Stomach Mucosa	stomach
5	chr14:55587600-55595600	Enhancers	Fetal Heart	heart
6	chr14:55588800-55594400	Enhancers	Adipose Nuclei	Adipose
7	chr14:55589600-55594600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:55589800-55595600	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:55590000-55595400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:55590000-55595600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:55590000-55595600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:55590200-55595800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:55590400-55595000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:55590400-55595600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:55590800-55596200	Weak transcription	Fetal Lung	lung
16	chr14:55591600-55595400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:55591600-55595400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr14:55591600-55595600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:55591800-55595000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:55592400-55595400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:55592400-55595600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:55592400-55595600	Weak transcription	K562	blood
23	chr14:55592600-55595400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:55592600-55595600	Weak transcription	Placenta	Placenta
25	chr14:55592600-55595600	Weak transcription	Gastric	stomach
26	chr14:55592600-55595800	Weak transcription	Spleen	Spleen
27	chr14:55592800-55595000	Weak transcription	Right Ventricle	heart
28	chr14:55592800-55595200	Weak transcription	Lung	lung
29	chr14:55592800-55595600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:55593000-55595400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:55593000-55595600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:55593000-55595600	Weak transcription	Esophagus	oesophagus
33	chr14:55593000-55596400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr14:55593200-55595200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:55593200-55595600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:55593200-55595600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:55593200-55595600	Weak transcription	Colonic Mucosa	Colon
38	chr14:55593200-55595600	Weak transcription	Small Intestine	intestine
39	chr14:55593200-55597800	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr14:55593400-55594400	Flanking Active TSS	Hela-S3	cervix
41	chr14:55593600-55594400	Enhancers	Placenta Amnion	Placenta Amnion
42	chr14:55593600-55595000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:55593600-55595400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:55593600-55595600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:55593600-55595600	Weak transcription	Ovary	ovary
46	chr14:55593600-55595600	Weak transcription	Right Atrium	heart
47	chr14:55593600-55595600	Enhancers	Osteobl	bone
48	chr14:55593800-55594600	Enhancers	NHDF-Ad	bronchial
49	chr14:55593800-55595200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:55593800-55595400	Enhancers	Muscle Satellite Cultured Cells	--

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