Variant report

Variant	rs17093148
Chromosome Location	chr14:55540691-55540692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55537620..55541123-chr14:55657205..55659374,4	MCF-7	breast:
2	chr14:55516915..55519975-chr14:55539860..55542972,3	MCF-7	breast:
3	chr14:55540168..55541709-chr14:55541911..55544234,2	MCF-7	breast:
4	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
5	chr14:55537560..55539994-chr14:55540251..55542557,2	K562	blood:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction
ENSG00000126787	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10144886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220644	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11846854	1.00[EUR][1000 genomes]
rs17128129	1.00[EUR][1000 genomes]
rs17128159	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28436296	1.00[AMR][1000 genomes]
rs28481602	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2879885	1.00[AMR][1000 genomes]
rs59220564	1.00[EUR][1000 genomes]
rs7161564	1.00[JPT][hapmap]
rs8009181	1.00[JPT][hapmap]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
2	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
3	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55530600-55541400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:55530800-55544200	Weak transcription	Colonic Mucosa	Colon
6	chr14:55531000-55544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:55531600-55541200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:55532400-55544000	Weak transcription	Esophagus	oesophagus
9	chr14:55532600-55541600	Weak transcription	HepG2	liver
10	chr14:55533400-55541400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:55534800-55541200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:55535000-55544400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:55535600-55544000	Weak transcription	A549	lung
14	chr14:55536600-55543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:55536600-55544200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:55536800-55540800	Weak transcription	K562	blood
17	chr14:55538000-55541000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:55538000-55542800	Enhancers	HSMM	muscle
19	chr14:55538000-55543000	Enhancers	HMEC	breast
20	chr14:55538200-55542800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:55538400-55543000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:55539000-55541400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:55539000-55541400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:55539200-55541000	Enhancers	Primary B cells from cord blood	blood
25	chr14:55539200-55541200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:55539200-55541200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:55539200-55541400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:55539200-55541600	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:55539200-55543800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr14:55539200-55544400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:55539400-55541000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:55539400-55541000	Weak transcription	Fetal Stomach	stomach
33	chr14:55539400-55541200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:55539400-55541200	Weak transcription	Fetal Lung	lung
35	chr14:55539400-55541200	Weak transcription	Stomach Mucosa	stomach
36	chr14:55539400-55541400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:55539400-55541400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:55539400-55541400	Enhancers	Osteobl	bone
39	chr14:55539400-55541800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:55539400-55542800	Enhancers	Primary B cells from peripheral blood	blood
41	chr14:55539400-55542800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:55539400-55543200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:55539400-55544000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:55539600-55541400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr14:55539600-55541400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:55539600-55541400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:55539600-55541400	Weak transcription	Psoas Muscle	Psoas
48	chr14:55539600-55541400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:55539600-55541400	Enhancers	NHEK	skin
50	chr14:55539600-55541800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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