Variant report

Variant	rs28481602
Chromosome Location	chr14:55557103-55557104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55368968..55370719-chr14:55556794..55559015,2	MCF-7	breast:
2	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
3	chr14:55550347..55552515-chr14:55555863..55558677,2	K562	blood:
4	chr14:55555833..55558389-chr14:55562200..55563979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction
ENSG00000131981	Chromatin interaction

rs_ID	r²[population]
rs10144886	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10220644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846854	1.00[EUR][1000 genomes]
rs17093148	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128129	1.00[EUR][1000 genomes]
rs17128159	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59220564	1.00[EUR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:55545000-55561400	Weak transcription	HMEC	breast
3	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
4	chr14:55549200-55559800	Weak transcription	Ovary	ovary
5	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
7	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
11	chr14:55555000-55557600	Enhancers	NHEK	skin
12	chr14:55556200-55557600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:55556200-55560000	Enhancers	Fetal Intestine Small	intestine
14	chr14:55556200-55560200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:55556400-55557200	Weak transcription	GM12878-XiMat	blood
16	chr14:55556400-55558600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:55556400-55558600	Weak transcription	Colonic Mucosa	Colon
18	chr14:55556400-55559400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:55556400-55561000	Weak transcription	A549	lung
20	chr14:55556400-55561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:55556400-55561600	Weak transcription	NH-A	brain
22	chr14:55556400-55561800	Weak transcription	NHLF	lung
23	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr14:55556600-55557200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:55556600-55557600	Enhancers	Placenta	Placenta
26	chr14:55556600-55557800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr14:55556600-55559800	Enhancers	Fetal Intestine Large	intestine
28	chr14:55556800-55559000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:55557000-55557200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr14:55557000-55557400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:55557000-55557400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr14:55557000-55557600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:55557000-55558000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:55557000-55558200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:55557000-55561400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:55557000-55561400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links