Variant report

Variant	rs10141141
Chromosome Location	chr14:32348284-32348285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10130764	0.92[ASN][1000 genomes]
rs10136892	0.83[ASN][1000 genomes]
rs10150448	0.85[ASN][1000 genomes]
rs10348	0.80[CHB][hapmap];0.86[ASN][1000 genomes]
rs10483392	0.87[ASN][1000 genomes]
rs11156716	0.86[ASN][1000 genomes]
rs11156717	0.90[ASN][1000 genomes]
rs1129622	0.80[CHB][hapmap];0.86[ASN][1000 genomes]
rs1129623	0.86[ASN][1000 genomes]
rs12431828	0.94[ASN][1000 genomes]
rs1572190	0.85[ASN][1000 genomes]
rs1889387	0.98[ASN][1000 genomes]
rs1953270	0.87[ASN][1000 genomes]
rs1959072	0.86[ASN][1000 genomes]
rs1959073	0.92[ASN][1000 genomes]
rs1959074	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1959075	0.92[ASN][1000 genomes]
rs2039484	0.91[ASN][1000 genomes]
rs2039485	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2378970	0.84[ASN][1000 genomes]
rs2890046	0.90[ASN][1000 genomes]
rs35943743	0.86[ASN][1000 genomes]
rs3742923	0.80[CHB][hapmap]
rs4474604	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4981132	0.85[ASN][1000 genomes]
rs4981133	0.85[ASN][1000 genomes]
rs4981134	0.85[ASN][1000 genomes]
rs4981135	0.85[ASN][1000 genomes]
rs4981917	0.82[ASN][1000 genomes]
rs4981918	0.83[ASN][1000 genomes]
rs4981921	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4981922	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56020946	0.80[ASN][1000 genomes]
rs56208157	0.80[ASN][1000 genomes]
rs6571481	0.87[ASN][1000 genomes]
rs7140475	0.85[ASN][1000 genomes]
rs7144599	0.87[ASN][1000 genomes]
rs7148374	0.89[ASN][1000 genomes]
rs7149538	0.87[ASN][1000 genomes]
rs7154334	0.91[ASN][1000 genomes]
rs8003195	0.93[ASN][1000 genomes]
rs8003582	0.85[ASN][1000 genomes]
rs8008192	0.87[ASN][1000 genomes]
rs8013469	0.85[ASN][1000 genomes]
rs8016004	0.92[ASN][1000 genomes]
rs8021532	0.88[ASN][1000 genomes]
rs8021918	0.80[CHB][hapmap]
rs8022047	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32345800-32350200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:32346800-32349800	Weak transcription	HSMMtube	muscle
3	chr14:32346800-32351400	Weak transcription	Pancreas	Pancrea
4	chr14:32346800-32351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:32347000-32349400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:32347000-32350200	Weak transcription	Ovary	ovary
7	chr14:32347000-32350200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:32347000-32351400	Weak transcription	Fetal Lung	lung
9	chr14:32347000-32361400	Weak transcription	Right Atrium	heart
10	chr14:32347200-32348600	Enhancers	Adipose Nuclei	Adipose
11	chr14:32347200-32349000	Weak transcription	NHDF-Ad	bronchial
12	chr14:32347200-32349600	Weak transcription	HSMM	muscle
13	chr14:32347200-32349600	Weak transcription	Osteobl	bone
14	chr14:32347200-32349800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:32347200-32349800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:32347200-32349800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:32347200-32349800	Weak transcription	NHLF	lung
18	chr14:32347200-32350000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:32347400-32349600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:32347400-32349800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:32347800-32350200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:32347800-32351400	Weak transcription	Spleen	Spleen
23	chr14:32348000-32350200	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:32348000-32350200	Weak transcription	Left Ventricle	heart
25	chr14:32348200-32349200	Weak transcription	HUVEC	blood vessel
26	chr14:32348200-32351400	Weak transcription	Rectal Smooth Muscle	rectum

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