Variant report

Variant	rs10141452
Chromosome Location	chr14:55667317-55667318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129377	1.00[AMR][1000 genomes]
rs10132692	1.00[AMR][1000 genomes]
rs10134274	1.00[AMR][1000 genomes]
rs10136782	1.00[AMR][1000 genomes]
rs10144957	1.00[AMR][1000 genomes]
rs10146096	1.00[AMR][1000 genomes]
rs10148963	1.00[AMR][1000 genomes]
rs10151598	1.00[AMR][1000 genomes]
rs13379161	1.00[AMR][1000 genomes]
rs28436729	1.00[AMR][1000 genomes]
rs28454005	1.00[AMR][1000 genomes]
rs28460177	1.00[AMR][1000 genomes]
rs28478406	1.00[AMR][1000 genomes]
rs28489712	1.00[AMR][1000 genomes]
rs28532794	1.00[AMR][1000 genomes]
rs9323276	1.00[AMR][1000 genomes]
rs9323277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:55662400-55667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:55662400-55667800	Weak transcription	HepG2	liver
4	chr14:55662600-55671000	Weak transcription	Aorta	Aorta
5	chr14:55667200-55667600	Flanking Active TSS	Ovary	ovary
6	chr14:55667200-55667800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:55667200-55667800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:55667200-55668200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr14:55667200-55668200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:55667200-55668800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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