Variant report

Variant	rs28478406
Chromosome Location	chr14:55537320-55537321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55536769..55540247-chr14:55595569..55598545,3	MCF-7	breast:
2	chr14:55536490..55539101-chr14:55568903..55571706,2	K562	blood:
3	chr14:55516948..55521248-chr14:55532171..55537345,7	K562	blood:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction
ENSG00000131981	Chromatin interaction

rs_ID	r²[population]
rs10129377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134274	1.00[AMR][1000 genomes]
rs10136782	1.00[AMR][1000 genomes]
rs10140189	1.00[AMR][1000 genomes]
rs10141452	1.00[AMR][1000 genomes]
rs10143025	1.00[AMR][1000 genomes]
rs10144957	1.00[AMR][1000 genomes]
rs10146096	1.00[AMR][1000 genomes]
rs10146709	1.00[AMR][1000 genomes]
rs10147430	1.00[AMR][1000 genomes]
rs10151598	1.00[AMR][1000 genomes]
rs13379161	1.00[AMR][1000 genomes]
rs28436729	1.00[AMR][1000 genomes]
rs28460177	1.00[AMR][1000 genomes]
rs28489712	1.00[AMR][1000 genomes]
rs28532794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323277	1.00[AMR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55519600-55538000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:55520200-55538400	Weak transcription	Fetal Kidney	kidney
3	chr14:55520400-55538200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:55520600-55538000	Weak transcription	Psoas Muscle	Psoas
5	chr14:55520600-55538600	Weak transcription	Fetal Brain Male	brain
6	chr14:55526400-55538000	Weak transcription	Small Intestine	intestine
7	chr14:55526600-55537600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:55526600-55538400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:55529400-55538400	Weak transcription	Fetal Heart	heart
10	chr14:55529800-55538000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:55530000-55538000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:55530000-55538000	Weak transcription	Brain Angular Gyrus	brain
13	chr14:55530000-55538000	Weak transcription	Left Ventricle	heart
14	chr14:55530000-55538000	Weak transcription	Lung	lung
15	chr14:55530000-55538400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:55530000-55538400	Weak transcription	Pancreas	Pancrea
17	chr14:55530000-55538600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:55530000-55538600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:55530000-55538600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:55530000-55538600	Weak transcription	Ovary	ovary
21	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
22	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
23	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:55530200-55538000	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:55530200-55538000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:55530400-55538800	Weak transcription	Fetal Stomach	stomach
27	chr14:55530600-55538000	Weak transcription	Brain Anterior Caudate	brain
28	chr14:55530600-55538000	Weak transcription	Spleen	Spleen
29	chr14:55530600-55538200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr14:55530600-55538200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:55530600-55538200	Weak transcription	HSMMtube	muscle
32	chr14:55530600-55538400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:55530600-55538600	Weak transcription	Fetal Brain Female	brain
34	chr14:55530600-55538600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:55530600-55538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr14:55530600-55541400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:55530800-55537400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:55530800-55538000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:55530800-55544200	Weak transcription	Colonic Mucosa	Colon
40	chr14:55531000-55539000	Weak transcription	Fetal Intestine Small	intestine
41	chr14:55531000-55539200	Weak transcription	Thymus	Thymus
42	chr14:55531000-55544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:55531600-55541200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr14:55531800-55538000	Weak transcription	HMEC	breast
45	chr14:55531800-55538600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:55532400-55538000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:55532400-55538200	Weak transcription	NHLF	lung
48	chr14:55532400-55544000	Weak transcription	Esophagus	oesophagus
49	chr14:55532600-55538000	Weak transcription	Aorta	Aorta
50	chr14:55532600-55538400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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