Variant report

Variant	rs10141888
Chromosome Location	chr14:105862573-105862574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:105862166-105862766	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr14:105862567-105862685	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr14:105862507-105862626	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105862303..105863927-chr14:105951268..105954237,2	K562	blood:
2	chr14:105791422..105793957-chr14:105861992..105864846,2	K562	blood:
3	chr14:105862050..105866153-chr14:105956114..105958822,3	K562	blood:
4	chr14:105861905..105865753-chr14:105884230..105887422,5	K562	blood:
5	chr14:105861825..105867195-chr14:105938738..105943218,7	MCF-7	breast:

No data

Variant related genes	Relation type
TEX22	TF binding region
ENSG00000182979	Chromatin interaction
ENSG00000251602	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000182809	Chromatin interaction
ENSG00000213145	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10147154	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105823600-105863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:105831000-105863800	Weak transcription	Fetal Kidney	kidney
3	chr14:105831400-105864000	Weak transcription	Osteobl	bone
4	chr14:105831600-105863200	Weak transcription	NHDF-Ad	bronchial
5	chr14:105844400-105862800	Strong transcription	Fetal Intestine Small	intestine
6	chr14:105845200-105862600	Strong transcription	Fetal Brain Female	brain
7	chr14:105848000-105864200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:105848400-105864000	Weak transcription	Psoas Muscle	Psoas
9	chr14:105849800-105863800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:105850400-105863400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:105850400-105864000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:105851000-105863600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:105851800-105863400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:105852000-105863000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:105852000-105864000	Weak transcription	Liver	Liver
16	chr14:105852200-105864200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:105852400-105863200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:105852400-105864000	Weak transcription	Left Ventricle	heart
19	chr14:105852400-105864200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:105852600-105864000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:105852800-105863800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:105852800-105863800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:105853000-105863800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:105853800-105864600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:105854400-105863600	Weak transcription	Dnd41	blood
26	chr14:105854400-105863800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:105854400-105864000	Weak transcription	Fetal Lung	lung
28	chr14:105854400-105864200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr14:105854400-105864200	Weak transcription	NHLF	lung
30	chr14:105857000-105863600	Weak transcription	Primary T cells from cord blood	blood
31	chr14:105857000-105863800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:105857000-105863800	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:105857000-105863800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:105857000-105864000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:105857200-105863200	Weak transcription	HSMM	muscle
36	chr14:105857200-105863200	Weak transcription	HSMMtube	muscle
37	chr14:105857200-105864000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:105857200-105864000	Weak transcription	Stomach Mucosa	stomach
39	chr14:105857400-105863000	Weak transcription	Colonic Mucosa	Colon
40	chr14:105857600-105862600	Strong transcription	Fetal Stomach	stomach
41	chr14:105857600-105863200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:105857600-105863200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:105859000-105864200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:105859200-105863400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:105859200-105864000	Weak transcription	Thymus	Thymus
46	chr14:105859800-105863200	Weak transcription	Esophagus	oesophagus
47	chr14:105859800-105863600	Weak transcription	Brain Angular Gyrus	brain
48	chr14:105859800-105864000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:105859800-105864000	Weak transcription	Gastric	stomach
50	chr14:105859800-105864200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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