Variant report

Variant	rs10147154
Chromosome Location	chr14:105869350-105869351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105868175..105870291-chr14:105950610..105952813,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213145	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10141888	0.80[YRI][hapmap]
rs11621365	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11845995	1.00[CHD][hapmap]
rs12435295	0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs28529463	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28541433	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28725385	0.81[ASW][hapmap]
rs4074001	1.00[CHD][hapmap]
rs4983407	1.00[CHD][hapmap]
rs4983414	1.00[CHD][hapmap]
rs4983418	1.00[CHD][hapmap]
rs4983613	1.00[ASN][1000 genomes]
rs4983614	1.00[CHD][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs6576085	1.00[ASN][1000 genomes]
rs6576086	1.00[ASN][1000 genomes]
rs6576087	1.00[ASN][1000 genomes]
rs6576088	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs6576099	1.00[CHD][hapmap]
rs7149988	1.00[ASN][1000 genomes]
rs7153174	1.00[CHD][hapmap]
rs7161158	1.00[CHD][hapmap]
rs73361094	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8005552	1.00[CHD][hapmap]
rs8014777	1.00[ASN][1000 genomes]
rs9743822	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105865600-105875000	Weak transcription	Fetal Kidney	kidney
2	chr14:105865800-105869400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:105866000-105869400	Weak transcription	NHDF-Ad	bronchial
4	chr14:105866200-105875000	Weak transcription	Brain Anterior Caudate	brain
5	chr14:105866400-105870400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:105866400-105877400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:105866600-105869600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:105866600-105870400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:105866600-105870600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:105866600-105877200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:105866600-105877400	Weak transcription	Brain Angular Gyrus	brain
12	chr14:105866800-105871600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:105866800-105877400	Weak transcription	Psoas Muscle	Psoas
14	chr14:105867000-105877200	Weak transcription	Pancreas	Pancrea
15	chr14:105867000-105877200	Weak transcription	Right Ventricle	heart
16	chr14:105867000-105877400	Weak transcription	Left Ventricle	heart
17	chr14:105867200-105877400	Weak transcription	HSMM	muscle
18	chr14:105867600-105869400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr14:105867600-105869400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:105867600-105869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:105867600-105869600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:105867600-105869600	Weak transcription	Liver	Liver
23	chr14:105867600-105869600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:105867600-105869600	Weak transcription	GM12878-XiMat	blood
25	chr14:105867600-105869800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:105867600-105869800	Weak transcription	Thymus	Thymus
27	chr14:105867600-105870600	Weak transcription	Primary B cells from cord blood	blood
28	chr14:105867600-105870600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr14:105867600-105870600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:105867600-105870600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:105867600-105870600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:105867600-105870600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:105867600-105870800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:105867600-105871000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:105867600-105871000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:105867600-105872000	Weak transcription	Dnd41	blood
37	chr14:105867600-105872200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr14:105867600-105873200	Weak transcription	Brain Substantia Nigra	brain
39	chr14:105867600-105875200	Weak transcription	Brain Germinal Matrix	brain
40	chr14:105867600-105875200	Weak transcription	NHLF	lung
41	chr14:105867600-105875400	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:105867600-105875400	Weak transcription	Fetal Brain Female	brain
43	chr14:105867600-105875600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr14:105867600-105876800	Weak transcription	Gastric	stomach
45	chr14:105867600-105877000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr14:105867600-105877000	Weak transcription	Ovary	ovary
47	chr14:105867600-105877000	Weak transcription	Hela-S3	cervix
48	chr14:105867600-105877200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:105867600-105877400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:105867600-105877400	Weak transcription	Brain Inferior Temporal Lobe	brain

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