Variant report

Variant	rs7161158
Chromosome Location	chr14:105915288-105915289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:105914908-105915298	K562	blood:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
2	CTCF	chr14:105914984-105915289	GM12891	blood:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
3	ZNF143	chr14:105914962-105915306	GM12878	blood:	n/a	n/a
4	JUND	chr14:105914968-105915325	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr14:105915140-105915290	NHEK	skin:	n/a	n/a
6	RAD21	chr14:105914955-105915390	ECC-1	luminal epithelium:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
7	GATA3	chr14:105914991-105915342	T-47D	breast:	n/a	chr14:105915031-105915039
8	SMC3	chr14:105914962-105915294	HepG2	liver:	n/a	chr14:105915134-105915148
9	CTCF	chr14:105914808-105915618	SK-N-SH	brain:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915353-105915366 chr14:105915134-105915155
10	RAD21	chr14:105914880-105915516	MCF-7	breast:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
11	ZBTB7A	chr14:105915049-105915295	K562	blood:	n/a	n/a
12	CTCF	chr14:105915140-105915290	GM12801	blood:	n/a	n/a
13	CTCF	chr14:105914647-105915572	A549	lung:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915353-105915366 chr14:105915134-105915155
14	CTCF	chr14:105914808-105915455	K562	blood:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915353-105915366 chr14:105915134-105915155
15	ELF1	chr14:105914861-105915320	GM12878	blood:	n/a	n/a
16	POLR2A	chr14:105914999-105915366	HUVEC	blood vessel:	n/a	n/a
17	RAD21	chr14:105914870-105915385	MCF-7	breast:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
18	CTCF	chr14:105914936-105915326	GM12878	blood:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
19	CTCF	chr14:105915032-105915322	ECC-1	luminal epithelium:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
20	SMC3	chr14:105914059-105915683	SK-N-SH	brain:	n/a	chr14:105915134-105915148
21	TCF12	chr14:105915070-105915289	H1-hESC	embryonic stem cell:	n/a	n/a
22	RAD21	chr14:105914855-105915427	HCT-116	colon:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
23	GABPA	chr14:105914750-105915366	H1-hESC	embryonic stem cell:	n/a	n/a
24	SMC3	chr14:105914951-105915319	GM12878	blood:	n/a	chr14:105915134-105915148
25	CTCF	chr14:105914977-105915305	GM12892	blood:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
26	RAD21	chr14:105914862-105915306	A549	lung:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
27	POLR2A	chr14:105915284-105915331	Hela-S3	cervix:	n/a	n/a
28	ZNF263	chr14:105914952-105915480	HEK293-T-REx	kidney:	n/a	chr14:105914983-105914992
29	RCOR1	chr14:105915005-105915310	K562	blood:	n/a	n/a
30	RAD21	chr14:105914967-105915288	HepG2	liver:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
31	RAD21	chr14:105914824-105915410	HCT-116	colon:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
32	ZNF143	chr14:105915111-105915324	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr14:105914872-105915337	H1-hESC	embryonic stem cell:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
34	ZNF143	chr14:105914969-105915305	K562	blood:	n/a	n/a
35	RAD21	chr14:105914962-105915329	H1-hESC	embryonic stem cell:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
36	RAD21	chr14:105914967-105915316	HepG2	liver:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
37	RAD21	chr14:105914746-105915497	SK-N-SH	brain:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
38	CTCF	chr14:105914997-105915345	Kidney_OC	kidney:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
39	SMC3	chr14:105914955-105915319	Hela-S3	cervix:	n/a	chr14:105915134-105915148
40	CTCF	chr14:105914870-105915471	HCT-116	colon:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915353-105915366 chr14:105915134-105915155
41	CHD2	chr14:105914977-105915297	H1-hESC	embryonic stem cell:	n/a	n/a
42	EP300	chr14:105915137-105915292	HepG2	liver:	n/a	n/a
43	CTCF	chr14:105914838-105915447	MCF-7	breast:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915353-105915366 chr14:105915134-105915155
44	PAX5	chr14:105915006-105915297	GM12892	blood:	n/a	n/a
45	NFIC	chr14:105914877-105915389	ECC-1	luminal epithelium:	n/a	n/a
46	RAD21	chr14:105914886-105915374	H1-hESC	embryonic stem cell:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
47	RAD21	chr14:105914970-105915316	A549	lung:	n/a	chr14:105915235-105915249 chr14:105915133-105915152
48	CTCF	chr14:105914983-105915295	GM19240	blood:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155
49	FOXA1	chr14:105914987-105915292	T-47D	breast:	n/a	n/a
50	CTCF	chr14:105914884-105915301	HepG2	liver:	n/a	chr14:105915135-105915148 chr14:105915132-105915150 chr14:105915134-105915155

No.	Distal block	Cell Line	Cell type
1	chr14:105913611..105915352-chr14:105924484..105927169,2	MCF-7	breast:
2	chr14:105914891..105915584-chr14:105951786..105952772,3	MCF-7	breast:
3	chr14:105914695..105915547-chr14:105956988..105957490,2	K562	blood:
4	chr14:105913992..105915746-chr14:105955743..105957547,12	MCF-7	breast:
5	chr14:105914665..105915615-chr14:105955777..105957497,7	MCF-7	breast:
6	chr14:105913441..105915504-chr14:105931555..105934334,2	K562	blood:
7	chr14:105913619..105915682-chr14:105957010..105958805,2	K562	blood:
8	chr14:105914511..105916451-chr14:105992688..105994743,2	MCF-7	breast:
9	chr14:105914892..105915597-chr14:105938651..105939550,2	MCF-7	breast:
10	chr14:105863414..105866995-chr14:105913665..105917421,4	MCF-7	breast:

Variant related genes	Relation type
MTA1	TF binding region
ENSG00000182979	Chromatin interaction
ENSG00000184986	Chromatin interaction
ENSG00000226174	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000182809	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10132353	1.00[JPT][hapmap]
rs10132438	1.00[JPT][hapmap]
rs10136173	0.82[AFR][1000 genomes]
rs10141048	1.00[JPT][hapmap]
rs10141334	1.00[JPT][hapmap]
rs10142682	1.00[JPT][hapmap]
rs10147154	1.00[CHD][hapmap]
rs10147378	1.00[JPT][hapmap]
rs10147674	1.00[JPT][hapmap]
rs10148379	1.00[JPT][hapmap]
rs10148455	1.00[JPT][hapmap]
rs10150915	0.80[YRI][hapmap]
rs11621365	1.00[CHD][hapmap]
rs11845995	1.00[CHD][hapmap]
rs11846567	1.00[JPT][hapmap]
rs11847128	1.00[JPT][hapmap]
rs11849421	1.00[JPT][hapmap]
rs12101178	1.00[JPT][hapmap]
rs4074001	1.00[CHD][hapmap]
rs4074004	1.00[JPT][hapmap]
rs4076933	1.00[JPT][hapmap]
rs4983407	1.00[CHD][hapmap]
rs4983409	0.87[ASW][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes]
rs4983411	1.00[JPT][hapmap]
rs4983414	1.00[CHD][hapmap]
rs4983418	1.00[CHD][hapmap]
rs4983614	1.00[CHD][hapmap]
rs4983623	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4983625	1.00[ASW][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4983628	0.82[YRI][hapmap]
rs6420943	0.82[AFR][1000 genomes]
rs6576099	1.00[CHD][hapmap]
rs6576102	0.98[AFR][1000 genomes]
rs7144362	1.00[JPT][hapmap]
rs7153174	1.00[CHD][hapmap]
rs8004328	1.00[JPT][hapmap]
rs8005552	1.00[CHD][hapmap]
rs8008801	1.00[JPT][hapmap]
rs8010649	1.00[JPT][hapmap]
rs8010888	1.00[JPT][hapmap]
rs8016693	1.00[JPT][hapmap]
rs9671295	1.00[JPT][hapmap]
rs9671890	1.00[JPT][hapmap]
rs9743822	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105887600-105919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:105888600-105918400	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:105889400-105916400	Weak transcription	Brain Anterior Caudate	brain
6	chr14:105890400-105916200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:105897400-105917000	Weak transcription	Primary B cells from cord blood	blood
8	chr14:105897600-105927200	Weak transcription	NH-A	brain
9	chr14:105897800-105940000	Weak transcription	K562	blood
10	chr14:105898400-105931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:105898400-105939800	Weak transcription	NHDF-Ad	bronchial
12	chr14:105900000-105915800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:105900800-105916400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:105902800-105925200	Strong transcription	Dnd41	blood
15	chr14:105902800-105937800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:105903200-105935400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:105904000-105919000	Weak transcription	Hela-S3	cervix
18	chr14:105904400-105939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:105906800-105931000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:105907000-105921800	Weak transcription	HMEC	breast
21	chr14:105907000-105940600	Weak transcription	Small Intestine	intestine
22	chr14:105907600-105915400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:105907600-105916800	Weak transcription	Brain Angular Gyrus	brain
24	chr14:105909200-105916200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:105909200-105916600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:105909200-105916600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:105909400-105916000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:105909400-105917000	Weak transcription	GM12878-XiMat	blood
29	chr14:105909600-105915600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:105909600-105915600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:105909600-105916000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:105909600-105916000	Weak transcription	Ovary	ovary
33	chr14:105909600-105916400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:105909600-105916400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:105909600-105916600	Weak transcription	Primary T cells from cord blood	blood
36	chr14:105909600-105916600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:105909600-105916600	Weak transcription	Aorta	Aorta
38	chr14:105909600-105916600	Weak transcription	Liver	Liver
39	chr14:105909600-105916600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:105909600-105923000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr14:105909800-105915400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:105909800-105915800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr14:105909800-105916200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:105909800-105916400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:105909800-105916400	Weak transcription	Pancreas	Pancrea
46	chr14:105909800-105926800	Weak transcription	HUVEC	blood vessel
47	chr14:105910000-105916000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:105910000-105916000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:105910000-105916400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:105910600-105925200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links