Variant report

Variant	rs9671295
Chromosome Location	chr14:105832863-105832864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105830942..105834686-chr14:105992333..105996584,4	K562	blood:

Variant related genes	Relation type
ENSG00000184986	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10132353	1.00[JPT][hapmap]
rs10132438	1.00[JPT][hapmap]
rs10141048	1.00[JPT][hapmap]
rs10141334	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10142682	1.00[JPT][hapmap]
rs10147378	1.00[JPT][hapmap]
rs10147674	1.00[JPT][hapmap]
rs10148379	1.00[JPT][hapmap]
rs10148455	1.00[JPT][hapmap]
rs11846567	1.00[JPT][hapmap]
rs11847128	1.00[JPT][hapmap]
rs11849421	1.00[JPT][hapmap]
rs12101178	1.00[JPT][hapmap]
rs28444495	0.81[AMR][1000 genomes]
rs28450137	1.00[ASN][1000 genomes]
rs28461287	0.81[AMR][1000 genomes]
rs28548340	0.81[AMR][1000 genomes]
rs4074004	1.00[JPT][hapmap]
rs4076933	1.00[JPT][hapmap]
rs4983411	1.00[JPT][hapmap]
rs57244820	0.81[AMR][1000 genomes]
rs7144362	1.00[JPT][hapmap]
rs7161158	1.00[JPT][hapmap]
rs8004328	1.00[JPT][hapmap]
rs8008801	1.00[JPT][hapmap]
rs8010649	1.00[JPT][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs8010888	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8016693	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9671890	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr14:105807400-105833600	Weak transcription	Aorta	Aorta
3	chr14:105808600-105848600	Weak transcription	HSMMtube	muscle
4	chr14:105810000-105833800	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:105814200-105848600	Weak transcription	Left Ventricle	heart
6	chr14:105818600-105846000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:105818800-105833600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:105818800-105849200	Weak transcription	A549	lung
9	chr14:105821800-105842600	Weak transcription	Fetal Brain Male	brain
10	chr14:105822000-105848800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:105822800-105833600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:105822800-105847800	Weak transcription	Liver	Liver
13	chr14:105823000-105833600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:105823600-105863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:105823800-105833800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:105823800-105837400	Weak transcription	HSMM	muscle
17	chr14:105823800-105846200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:105823800-105849600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:105825200-105833400	Weak transcription	Colonic Mucosa	Colon
20	chr14:105825600-105833000	Weak transcription	Pancreas	Pancrea
21	chr14:105825600-105834200	Weak transcription	Brain Anterior Caudate	brain
22	chr14:105825600-105848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:105825800-105833200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:105827600-105833600	Weak transcription	Brain Angular Gyrus	brain
25	chr14:105827600-105833600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr14:105827600-105837800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:105827800-105833200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:105827800-105833600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:105827800-105847600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:105828000-105833000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:105830600-105833000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:105830600-105834600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:105831000-105833200	Weak transcription	Right Ventricle	heart
34	chr14:105831000-105833400	Weak transcription	Esophagus	oesophagus
35	chr14:105831000-105833400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:105831000-105833600	Weak transcription	Fetal Brain Female	brain
37	chr14:105831000-105863800	Weak transcription	Fetal Kidney	kidney
38	chr14:105831200-105833400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr14:105831200-105833600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:105831200-105833600	Weak transcription	Ovary	ovary
41	chr14:105831200-105834800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr14:105831400-105833000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:105831400-105833000	Weak transcription	Brain Germinal Matrix	brain
44	chr14:105831400-105833200	Weak transcription	Adipose Nuclei	Adipose
45	chr14:105831400-105833600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:105831400-105833600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:105831400-105833600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr14:105831400-105833800	Weak transcription	Fetal Lung	lung
49	chr14:105831400-105840600	Weak transcription	NHEK	skin
50	chr14:105831400-105844400	Weak transcription	Stomach Mucosa	stomach

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