Variant report

Variant	rs4076933
Chromosome Location	chr14:105848891-105848892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105847451..105849244-chr14:105853752..105857864,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179364	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10132353	1.00[JPT][hapmap]
rs10132438	1.00[JPT][hapmap]
rs10141048	1.00[JPT][hapmap]
rs10141334	1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs10142682	1.00[JPT][hapmap]
rs10147378	1.00[JPT][hapmap]
rs10147674	1.00[JPT][hapmap]
rs10148379	1.00[JPT][hapmap]
rs10148455	1.00[JPT][hapmap]
rs11846567	0.81[ASW][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11847128	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11849421	1.00[JPT][hapmap]
rs12101178	1.00[JPT][hapmap]
rs28406946	1.00[ASN][1000 genomes]
rs28444495	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28450331	1.00[ASN][1000 genomes]
rs28461287	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28488281	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28507499	1.00[ASN][1000 genomes]
rs28529001	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28548340	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28588179	1.00[ASN][1000 genomes]
rs28733380	1.00[ASN][1000 genomes]
rs4073351	1.00[ASN][1000 genomes]
rs4074004	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4983411	1.00[JPT][hapmap]
rs57091581	1.00[ASN][1000 genomes]
rs57244820	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58214606	1.00[ASN][1000 genomes]
rs60505080	1.00[ASN][1000 genomes]
rs61326617	1.00[ASN][1000 genomes]
rs7144362	1.00[JPT][hapmap]
rs7161158	1.00[JPT][hapmap]
rs73361060	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8004328	1.00[JPT][hapmap]
rs8008801	0.93[ASW][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8010649	1.00[JPT][hapmap]
rs8010888	0.87[ASW][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016693	1.00[JPT][hapmap]
rs9671295	1.00[JPT][hapmap]
rs9671890	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr14:105818800-105849200	Weak transcription	A549	lung
3	chr14:105823600-105863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:105823800-105849600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:105831000-105863800	Weak transcription	Fetal Kidney	kidney
6	chr14:105831400-105864000	Weak transcription	Osteobl	bone
7	chr14:105831600-105850600	Weak transcription	Fetal Heart	heart
8	chr14:105831600-105855200	Strong transcription	Fetal Stomach	stomach
9	chr14:105831600-105863200	Weak transcription	NHDF-Ad	bronchial
10	chr14:105832200-105849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:105835200-105849200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:105835200-105849400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:105836000-105850000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:105836400-105849000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:105836600-105849000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:105837800-105855200	Weak transcription	HSMM	muscle
17	chr14:105838200-105849200	Weak transcription	Fetal Lung	lung
18	chr14:105838400-105849200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:105842200-105852600	Weak transcription	NHEK	skin
20	chr14:105842600-105849600	Weak transcription	NH-A	brain
21	chr14:105842600-105856000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:105842800-105851200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:105842800-105854600	Weak transcription	Primary B cells from cord blood	blood
24	chr14:105842800-105855200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:105842800-105855800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr14:105842800-105856400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:105842800-105856400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:105843200-105849200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr14:105843200-105854200	Strong transcription	Brain Hippocampus Middle	brain
30	chr14:105843600-105850200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:105844000-105855200	Strong transcription	Brain Cingulate Gyrus	brain
32	chr14:105844400-105854400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr14:105844400-105856200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:105844400-105862400	Strong transcription	Brain Germinal Matrix	brain
35	chr14:105844400-105862800	Strong transcription	Fetal Intestine Small	intestine
36	chr14:105844600-105849800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:105844600-105850400	Strong transcription	Fetal Muscle Leg	muscle
38	chr14:105844600-105854200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:105844800-105849000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:105844800-105857000	Weak transcription	Stomach Mucosa	stomach
41	chr14:105845000-105852000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:105845000-105854200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:105845200-105855000	Strong transcription	Spleen	Spleen
44	chr14:105845200-105857200	Strong transcription	Right Ventricle	heart
45	chr14:105845200-105862600	Strong transcription	Fetal Brain Female	brain
46	chr14:105845400-105850000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:105845400-105851600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:105845400-105853800	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:105845400-105854000	Strong transcription	Brain Substantia Nigra	brain
50	chr14:105845400-105855800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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