Variant report

Variant	rs10132353
Chromosome Location	chr14:105820822-105820823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr14:105820628-105820876	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105647073..105649284-chr14:105818650..105821094,2	MCF-7	breast:

Variant related genes	Relation type
PACS2	TF binding region
ENSG00000257622	Chromatin interaction
ENSG00000183828	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10132438	1.00[JPT][hapmap]
rs10141048	1.00[JPT][hapmap]
rs10141334	1.00[JPT][hapmap]
rs10142682	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs10147378	1.00[JPT][hapmap]
rs10147674	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs10148379	1.00[JPT][hapmap]
rs10148455	1.00[JPT][hapmap]
rs11846567	1.00[JPT][hapmap]
rs11847128	1.00[JPT][hapmap]
rs11847153	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs11847295	1.00[EUR][1000 genomes]
rs11849421	1.00[JPT][hapmap]
rs12101178	1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs28378394	0.87[AMR][1000 genomes]
rs28545538	0.87[AMR][1000 genomes]
rs28569215	1.00[AMR][1000 genomes]
rs4074004	1.00[JPT][hapmap]
rs4076933	1.00[JPT][hapmap]
rs4983411	1.00[JPT][hapmap]
rs57229884	1.00[EUR][1000 genomes]
rs58816330	1.00[AMR][1000 genomes]
rs6576084	1.00[AMR][1000 genomes]
rs7144362	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs7146660	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs7161158	1.00[JPT][hapmap]
rs73357391	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357398	1.00[EUR][1000 genomes]
rs73359015	0.87[AMR][1000 genomes]
rs73359017	0.87[AMR][1000 genomes]
rs73359035	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8004328	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs8008801	1.00[JPT][hapmap]
rs8010649	1.00[JPT][hapmap]
rs8010888	1.00[JPT][hapmap]
rs8016693	1.00[JPT][hapmap]
rs9671295	1.00[JPT][hapmap]
rs9671782	1.00[AMR][1000 genomes]
rs9671890	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105784000-105821800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:105793800-105821000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:105797400-105821200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:105799000-105822200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:105799800-105830800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr14:105804600-105821000	Weak transcription	Gastric	stomach
8	chr14:105804600-105829800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:105807400-105830800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:105807400-105833600	Weak transcription	Aorta	Aorta
11	chr14:105808600-105848600	Weak transcription	HSMMtube	muscle
12	chr14:105809800-105821200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:105809800-105830200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:105809800-105830400	Weak transcription	Fetal Lung	lung
15	chr14:105810000-105833800	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:105812600-105829600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr14:105812800-105821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:105813400-105828000	Strong transcription	Fetal Intestine Small	intestine
19	chr14:105813800-105828400	Strong transcription	Fetal Stomach	stomach
20	chr14:105814000-105822000	Weak transcription	Psoas Muscle	Psoas
21	chr14:105814200-105823200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:105814200-105848600	Weak transcription	Left Ventricle	heart
23	chr14:105815000-105821400	Weak transcription	Colonic Mucosa	Colon
24	chr14:105816400-105831000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:105816800-105821600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:105817200-105821000	Weak transcription	Esophagus	oesophagus
27	chr14:105817200-105821000	Weak transcription	Ovary	ovary
28	chr14:105817400-105821400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:105817600-105821000	Weak transcription	Brain Germinal Matrix	brain
30	chr14:105817800-105821200	Weak transcription	Dnd41	blood
31	chr14:105818000-105821000	Weak transcription	Fetal Brain Female	brain
32	chr14:105818200-105826800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:105818400-105821400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr14:105818400-105822800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:105818600-105821000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr14:105818600-105821000	Weak transcription	Brain Anterior Caudate	brain
37	chr14:105818600-105821000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:105818600-105821000	Weak transcription	Pancreas	Pancrea
39	chr14:105818600-105821200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:105818600-105821400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:105818600-105821600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:105818600-105823400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr14:105818600-105827000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr14:105818600-105830200	Weak transcription	Osteobl	bone
45	chr14:105818600-105830400	Weak transcription	Fetal Thymus	thymus
46	chr14:105818600-105830800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr14:105818600-105846000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:105818800-105821000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr14:105818800-105821000	Weak transcription	Brain Angular Gyrus	brain
50	chr14:105818800-105821000	Weak transcription	Brain Cingulate Gyrus	brain

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